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Qatar Foundation Annual Research Conference Proceedings Volume 2016 Issue 1
- Conference date: 22-23 Mar 2016
- Location: Qatar National Convention Center (QNCC), Doha, Qatar
- Volume number: 2016
- Published: 21 March 2016
421 - 440 of 656 results
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Modified Silk with Cell-Adhesive and Non-Thrombogenic Properties as a Tissue Engineering Substrate
Authors: Matthias Gabriel, Marc Becker and Christian Friedrich VahlIntroduction
Replacement of damaged tissue is nowadays an aim of tissue engineering. This technique involves the use of porous or fibrous structures – the so-called scaffolds – that support the colonization with the desired cell type and which are degraded after fulfilling their temporary supporting function. Basic requirements for the prevailing materials used in this field are nontoxicity, low immunogenicity and cell-adhesiveness. Furthermore blood-contacting devices should exhibit low thrombogenicity.
The biopolymer silk, mainly consisiting of the protein silk fibroin, matches some of these criteria but bare silk does not facilitate cellular adhesion and growth and unfortunately the material is prone to platelet attachment.
In our approach, the chemical surface immobilization of a cell adhesive peptide of silk samples reduces thrombocyte adhesion to a large extent while simultaneously promotes specific adhesion and colonization by endothelial cells (ECs).
The specific interaction of the modification was further demonstrated by fibroblast cell culture.
Materials & Methods
The EC specific adhesive peptide Arg-Glu-Asp-Val (REDV) derived from the extra cellular matrix protein fibronectin was used in our experiments. The peptide was chemically immobilized onto silk fabric scaffold by using hexamethylene diisocyanate (HMDI) as an activator for the substrate. Subsequent hydrolysis of pending isocyanate moieties yielded in primary amino functionalities. REDV was subsequently conjugated directly using a short chain amino-reactive crosslinker or via a bifunctional polyethylene glycol (PEG) spacer. Additionally, silk was modified with amino-functional PEG only. Modified as well as untreated specimens were subjected to cell culture using ECs and fibroblasts. In addition samples were challenged with platelet rich plasma in order to evaluate thrombocyte adhesion. Potential changes in material bulk properties and morphology were checked by scanning electron microscopy, gel permeation chromatography and mechanical testing.
Results & Discussion
Coverage of silk fabric with ECs was greatly promoted through REDV-modification by a factor of 17 (directly coupled peptide) and a factor of 20 (PEG-mediated coupling) respectively after 2 weeks growth in comparison to cell colonization of untreated material. Substrate modification also inhibited initial (24 h) fibroblast adhesion. Thrombocyte attachment was strongly reduced 5-fold as a result of PEG-modification, independent of an additionally conjugated peptide. Mechanical (tensile testing) as well as morphological properties (SEM) were not significantly altered by the chemical treatment. The initial activation of silk showed no detectable influence on the composition (GPC).
Conclusion
Taken together, the feasibility of improving the biological performance of silk, an established biomaterial, was shown. We where able to show that the chemical modification left the basic material properties largely unaffected. These findings may contribute to novel tissue engineering approaches that facilitate the endothelialization of cardiovascular implants such as vascular grafts and heart valves.
Figure 1: Covalent immobilization of the REDV peptide – either directly coupled or PEG-mediated – renders silk an excellent substrate for endothelialization. In addition the presence of PEG alone inhibits the attachment of platelets to a large extend.
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An Organic Field Effect Transistor Based Nano Biosensor for the Early Detection of Cardio Vascular Disease – The Most Common Death Causing Disease in Qatar
More LessQatar has one of the world's fastest growing population. The lifestyle and socio-economic situation of the Qatar, like other Arab countries are also vastly changing according to the growing trends. These changes finally reflected in the life expectancy and led to a rise in the “Non-Communicable diseases” or otherwise known as the diseases of longevity like Cancer, Cardio Vascular Diseases (CVD), Diabetes Mellitus (DM), Asthma, Liver Cirrhosis etc. According to the data of Qatar Health Report of the year 2012, Coronary Heart Disease is one of the most common causes of death in Qatar after road traffic accidents [1]. It is the foremost cause of death universally, demonstrating 30 percent and in Qatar it is 13.65 %. Cardio Vascular Disease is not considered as a solitary condition, but it is a collection of diverse conditions that affect both heart and blood carrying vessels. There are many biomarkers which are currently used for the detection of CVD in the early stage. C-reactive protein (CRP) is one among them which is seen in blood plasma which in turn is produced in the hepatocytes of liver. The synthesis of CRP is initiated due to the inflammation response from fat cells and macrophages. The clinical significance of CRP is that it is considered as one of the best authenticated biomarker for Cardio Vascular Diseases.
Organic electronics have established into a sensational area of technology and research to substitute typical inorganic semiconductors. Out of that Organic Field Effect Transistor (OFET) have found new uses in the area of biosensors. OFET biosensors mainly use π-conjugated organic semiconductors as electronic materials which is encapsulated with a biological component which can be either antibodies, DNA, enzymes, proteins or bacteria. These are mainly due to their low manufacturing cost when compared to the traditional diagnosing techniques and faster response time. Another advantage of OTFT biosensors over other sensing techniques are the possibility of miniaturization and the output can be delivered in simple electronic form [2]. The biological component can be incorporated in to the active layer and when a source-drain voltage is supplied, the antibody/antigen binding behavior acts as a resistor in the circuit which will be a current flow as a result of charge carrier transport with respect to the corresponding biological or chemical reaction, which can be calculated and displayed. A linear rise in the drain current of the OFET devise can be observed in proportional to the concentration of the biological component [3]. The response time may vary from 10 to 20 seconds.
In this article we are demonstrating an OFET biosensor for the detection of C-reactive protein using antigen-antibody reaction. The biological component will be encapsulated inside the buffer layer of OFET which is spin coated using poly(3,4-ethylenedioxythiophene–poly(styrene-sulfonate) (PEDOT:PSS). The entrapment process is done by electrochemical polymerization. The device is fabricated in such a way that the antigen-antibody reaction will alter the electron flow of the OFET which can be attributed to the concentration of the C-reactive protein. This will in turn change the characteristic current-voltage produced which is measured using a Keithley electrical measurement system. A linear rise in the OTFT drain current may be observed with proportional to the amount of CRP-Anti CRP complex, which is further calculated and displayed in the form of digits.
References
1. Qatar Health Report of the year 2012.
2. Danesh, J., et al., C-Reactive Protein and Other Circulating Markers of Inflammation in the Prediction of Coronary Heart Disease. New England Journal of Medicine, 2004. 1387 p.
3. Maddalena F. Organic field-effect transistors for sensing applications. Groningen: s.n., 2011. 110 p.
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Improving Insulin Therapy Related Knowledge in Type 2 DM Among Physicians in West-Bay Health Center
Authors: Islam Ahmed Noureldin and Amal Al AliBackground
Studies show that diabetics are in high risk for complications, hospitalization, and death from uncontrollability.
Good Glycemic control is an important part of preventive services for diabetic complications. One of the most important treatment options for Diabetic patient is insulin therapy, however there is evidence of poor physician knowledge about types and modalities of insulin therapy. Lack of knowledge will increase the likelihood of medication errors; contribute to poor glycemic control in diabetic patient and increased morbidity and mortality
- Our aim is to improve Insulin therapy related knowledge in type 2 DM Among Physicians in West-bay health center by 20% above baseline by January 2013 and To raise the awareness of that problem among our physicians.
Subjects, Materials & Methods
- The project began on November 2012 with baseline Questionnaire survey as pilot for our study. Followed by This Pre-intervention insulin knowledge Questionnaire conducted to Identify deficient areas in the insulin-Related knowledge with the results showed Mean Percentage of incorrect answers is 62%.
- For more on which brainstorming session was done to identify the root causes of such problem, and depicted using the fish bone diagram.
- A survey questionnaire was designated to assess the main causes of the problem and distributed to nurses and physicians working in NCD clinics.
Prioritization of Reasons of insufficient insulin therapy knowledge demonstrated in Paretto chart.
According to analysis we found three main causes of the problem:
1. a – No Training Program for physicians.
2. No specific form or Ineffective Auditing
3. Less Exposure to Patient with T2DM.
- Our intervention was in the form of:
1- Training program: conducted on December 2012 and it is include a PowerPoint presentation, problems solving cases, and group discussion about insulin types and Pharmacokinetics, concerns about insulin therapy, initiation, titration, and monitoring of insulin therapy, and insulin regimens in PHC setting.
2- Post intervention insulin knowledge Questionnaire: distributed after conducting training program.
- Two audits done retrospectively before intervention & one done after to show average percentage of improvement in knowledge to assess effect of intervention.
- All data was demonstrated using run chart.
Results
Improvement of insulin therapy-related knowledge reflected by mean percentage of correct answers in pre & post questionnaire conducting before and after training program. showed mean correct answers improved from 38% to 78 % in physician in West Bay H.C.
Conclusions
The results of the pre and post questionnaire analyses clearly showed an improvement in the level of insulin therapy knowledge among physicians.
The study indicates the areas that need to be addressed with greater emphasis.
The post test analysis shows that the training program has been successful in significantly improving knowledge of insulin therapy that may help to improve patient safety in PHC.
Next Steps
Share results with training and development dept.
Expansion of insulin therapy training program to include All PHC to transfer the knowledge.
Continue process of education (twice annually).
To analyses the segmented data to see where the improvement can be happen.
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Time Course of Platelet Activation Markers as a Potential Prognostic Indicator after Primary Percutaneous Coronary Angioplasty in Qatar
Rationale
Myocardial infarction (MI) is one of the leading causes of death and disability worldwide. In Qatar specifically, cardiovascular diseases account for 20% of the main causes of death in the country, and the cases of MI is rising rapidly. Recent developments in the management of MI, particularly the emergent opening of the Culprit artery by primary percutaneous coronary intervention (PPCI), have resulted in significant improvement of outcome in patients. In spite of that, the early and long outcome following MI varies considerably in different patients, and a significant number develop major adverse cardiac events (MACE) in the first year after successful PPCI. The clinical complications of MI, such as ventricular remodelling and heart failure, are thrombo-inflammatory processes that involve platelet activation and interactions with blood cells, the endothelium, and the myocardium. Increased platelet activation has been reported in numerous cardiovascular diseases including hypertension, atherosclerosis, stroke, acute coronary syndromes, and myocardial infarction. However, the course of platelet activation after MI and its role in adverse remodelling has not yet been assessed.
Objective
The aim of this study is to evaluate the time course of platelet activation markers in patients diagnosed with acute ST-segment elevation myocardial infarction (STEMI) undergoing primary percutaneous coronary intervention (PPCI) in Qatar. Findings will be correlated with patients’ clinical outcomes to evaluate the role of platelet activation markers as prognostic markers of disease progression in adverse remodelling after PPCI.
Methods
Platelet activation was assessed by expression of inflammatory markers platelet P-selectin (CD62P), and lysosome-associated membrane protein (CD63), and formation of platelet-neutrophil aggregates (PNA) using flow cytometry. Measurements were done in peripheral blood samples obtained from healthy subjects (n = 25) and from patients at admission to the cath lab at day 0 (n = 55) before PPCI, and 48 hours (n = 51) and, 1 month (n = 48) after PPCI. P-selectin and CD63 expression is defined as the percentage of antibody-positive platelets (P-sel+ and CD63+). PNA are gated by their characteristic forward and side scatter properties and identified as dual-labelled cells in the gate of neutrophils exhibiting leukocyte CD45 and platelet CD42b fluorescence (CD45+/CD42b+).
Results
Platelet P-selectin and CD63 expression were high in patients at day 0 than in healthy control subjects (% of expression: 24.4 ± 3.0 vs 9.0 ± 2.7; p
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Synthesis, Characterization, Crystal Structures, and in vitro Antitumor Activity of Palladium and Platinum (Ii) Complexes with 2-Acetyl-4-Methylthiazole Thiosemicarbazone and 2-Acetylpyrazine Thiosemicarbazone
Authors: Hassan Nimir, Norah Al Mohaideb, Mariem Hamad, Awadelkareem Ali, Cenk Aktas, Volker Huch, Michael Veith and Uli RauchThe novel Schiff bases I HAMTTSC (2-Acetyl-4-methylthiazole thiosemicarbazone), II HAPTSC(2-Acetylpyrazine thiosemicarbazone) and their complexes with Pt(II) and Pd(II): 1 [Pt(AMTTSC)Cl], 2 [Pt(AMTTSC)2], 3 [Pd(AMTTSC)Cl], 4 [Pd(AMTTSC)2], 5 [Pt(APTSC)Cl], 6 [Pt(APTSC)2], 7 [Pd(APTSC)Cl], and 8 [Pd(APTSC)2] have been synthesized, and characterized by elemental analysis and spectroscopic studies. The crystal structure of the Schiff bases I, II, and the complex 1 [Pt(AMTTSC)Cl], have been solved by single-crystal X-ray diffraction. The electronic, IR, UV/Vis, and NMR spectroscopic data of I and II and their complexes are reported. The in vitro antitumor activity of the Schiff bases and 1, 2, 4, 5 and 6 complexes against two different human tumor cell lines (HT-29 and HuTu-80) reveals that the complexes are more cytotoxic than their corresponding ligands with IC50 values at the range of 0.1–10 μM. These compounds can therefore be considered as agents with potential antitumor activity.
Molecular structure of 1 [Pt(AMTTSC)Cl]
Introduction
Thiosemicarbazones (TSCNs) are very promising molecules in coordination chemistry because of their pharmacological properties of both ligands and complexes, (1–3) which include notably their antiparasital, (4) antibacterial (5, 6) and antitumor activities (7) depending on the parent aldehyde and ketone and, of course, metal ion. The thiosemicarbazone ligand usually coordinates with a metal through the imine nitrogen and the sulphur atom forming a five-membered ring chelate. Since cis-platin emerged as the most important antitumor drug (8), thousands of metal complexes have been synthesized and characterized in order to study the effect of the metal, the attached group on the structural and kinetic properties involved in the biological activity. (9) However significant problems are still extant, including side effects, toxicity, cancer specificity and acquired resistance. Consequently the development of new compounds outside the usual coordination sphere or of different structural properties is the challenge to cancer research.
Synthesis of the ligands
The ligands 2-Acetyl-4-methylthiazole thiosemicarbazone and 2-acetylpyrazine thiosemicarbazone, were prepared according to the literature (10).
Synthesis of Complexes Pt (AMTTSC)Cl Complex
A solution of K2PtCl4 (0.208 g, 0.5 mmol) in methanol, was added dropwise to a stirred solution of HAMTTSC (0.5 mmol) in 20 mL of methanol. The solution was refluxed for 2 hours and stirred for 24 hours at room temperature. The dark red precipitate was collected by filtration and dried in vacuo. Crystals suitable for X-Ray diffraction were obtained through slow evaporation of the DMF solvent.
Solid, yield: 70.59%, m.p. 236–237°C. Anal. Calc. For Pt(C7H9N4S2)Cl (443.84 g/mol): C, 18.94%; H, 2.04%; N, 12.62%. Found: C, 18.74%; H, 2.18%; N, 12.85%. I.R. (solid state, cm− 1): ν(NH2) 3395, 3267; ν(C = N) 1520.38; ν(C = S) 873.31; ν(N-N)1065.89. 1H-N.M.R (DMSO-d6): δ 2.21, 2.41 (s, 6H, 2CH3), 7.75 (s, 1H); 8.07(b, 2H, NH2).). 13C-N.M.R. (DMSO-d6): δ 13.93, 16.39 (2CH3); 148.59,-154.62(3C ring); 171.92 (HC = N); 183.20 (C = S). Electronic spectra (λmax nm): 270, 391, 531.
Pt (AMTTSC) 2 Complex
A solution of K2PtCl4 (0.208 g, 0.5 mmol) in methanol, was added dropwise to a stirred solution of HAMTTSC (1.0 mmol) in 30 mL of methanol. The solution was refluxed for 2 hours and stirred for 24 hours at room temperature. The pinkish red precipitate was collected by filtration and dried in vacuo.
Solid, yield: 74.36%, m.p. dec.>245°C.Anal. Calc. For Pt(C7H9N4S2)2 (621.69 g/mol): C, 27.05%; H, 2.92%; N, 18.02%. Found: C, 27.01%; H, 3.028%; N, 18.97%. IR (solid state, cm–1): ν(NH2) 3354.48, 3265.78; ν(C = N) 1535.94; ν(C = S) 873.25; ν(N-N) 1075.01. 1H-N.M.R (DMSO-d6): δ 2.21, 2.39 (s, 6H,2CH3), 7.74, 7.34(s, 1H); 8.07 (b, 2H, NH2); 8.51, (b, 2H, NH2). 13C-N.M.R. (DMSO-d6): δ 13.51, 16.39 &13.91, 16.76 (4CH3); 144.02-152.49 &148.57-154.64 (3C ring); 166.07&171.93 (HC = N); 183.22 (C = S). Electronic spectra (λmax nm): 270, 363, 389, 53.
Pd (AMTTSC)Cl Complex
A solution of K2PdCl4 (0.163 g, 0.5 mmol) in methanol, was added dropwise to a stirred solution of HAMTTSC (0.5 mmol) in 20 mL of methanol. The solution was refluxed for 2 hours and stirred for 14 hours at room temperature. The orange precipitate was collected by filtration, washed with ethanol and ether, and dried in vacuo.
Solid, yield: 92.39%. m.p. 236–237°C. Anal. Calc. For Pd(C7H9N4S2)Cl (355.18 g/mol): C, 23.67%; H, 2.55%; N, 15.77%. Found: C, 22.94%; H, 2.68%; N, 15.09%. IR (solid state, cm− 1): ν(NH2) 3426.47, 3304.62; ν(C = N) 1552.37; ν(C = S) 867.85; ν(N-N) 1118.21. 1H-N.M.R. (DMSO-d6): δ 2.25, (s, 6H, 2CH3), 7.64 (s, 1H); 7.93 (d, 2H, NH2).13C-N.M.R. (DMSO-d6): δ 13.83, 16.36 (2CH3); 145.69, 147.79–154.36(3C ring); 169.58 (HC = N); 180.71 (C = S). Electronic spectra (λmax nm): 274, 313, 386,493.
Pd(AMTTSC)2 Complex
A solution of Pd(acac)2 (0.152 g, 0.5 mmol) in CH2Cl2/ CH3OH (30 mL, 2:1 v/v) was added dropwise to a stirred solution of HAMTTSC (1.0 mmol) in 30 mL of methanol. The solution was refluxed for 2 hours and stirred for 24 hours at room temperature. The red precipitate was collected by filtration, washed with ethanol and ether, and dried in vacuo.
Solid, yield: 79.54%. m.p. dec.>174°C. Anal. Calc. For Pd(C7H9N4S2)2, (533.03 g/mol): C, 31.55%; H, 3.4%; N, 21.02%. Found: C, 30.77%; H, 3.62%; N, 19.84%. IR (solid state, cm− 1): ν(NH2) 3308.98, 3257.77; ν(C = N) 1557.07; ν(C = S) 871.65; ν(N-N)1080.62. 1H-N.M.R. (DMSO-d6): δ 1.46, 1.62 (s, 6H, 2CH3), 7.04 (s, 1H); 8.04, 6.74 (d, 2H, NH2). 13C-N.M.R. (DMSO-d6): δ 13.66, 16.18 (2CH3); 147.49, 152.70& 148.44, 155.45 (3C ring); 169.62&171.19 (HC = N);, 182.38 (C = S). Electronic spectra (λmax nm): 289, 348, 448.
Conclusion
New potential anti-cancer Pt (II) and Pd(II) complexes were synthesized through the reaction of the heterocyclic thiosemicarbazone ligands with Pt (II) and Pd (II) ions in 1:1 and 1:2 ratios reactions.
The structures of the synthesized compounds were elucidated on the bases of spectroscopic data (IR. 1H and 13C N.M.R, UV-VIS and XRD).
As the experimental results show, the synthesized Schiff bases reacts with Pt(II) ion in different modes of bonding, they react as tridentate through the mercaptide sulfur ion, the azomethine nitrogen atom and the nitrogen of the ring.
All ligand and complexes tested show a concentration dependent reduction of cell proliferation. The test results show that the change of the ligand metal ratio has significant effects on the antiproliferative activities of the platinum(II) complexes. In general, it was found that complexes were more active than the corresponding ligand. The complex with the formula PtLCl was found to be slightly more active than the complexes with formula PtL2 against HT-29 and HuTu cancer cells line.
References
(1) Kovala-Demertzi D., Boccarelli A., Demertzis M. A., and Coluccia M., In vitro antitumor activity of 2-acetyl pyridine 4N-ethyl thiosemicarbazone and its platinum(II) and palladium(II) complexes, Chemotherapy, (2007), 53,2, 148.
(2) Kovala-Demertzi D., Varadinova T., Genova P., Souza P., and Demertzis M. A., “Platinum(II) and palladium(II) complexes of pyridine-2-carbaldehyde thiosemicarbazone as alternative antiherpes simplex virus agents, Bioinorganic Chem. and App, (2007), 56165, 2007.
(3) Scovill, J.P. Klayman D.L., Franchino C.F., Acetylpyridine Thiosemicarbazones Complexes with Transition Metals as Antimalarial and Antileukemic Agents. J. Med. Chem., (1982); 25, 1261.
(4) Duffy K. J., Shaw A. N., Delmore E., Dillon S. B., Erickson-Miller C., Giampa L., Huang Y., Keenan R. M., Lamb P., Liu N., Miller S. G., Price A. T., Rosen J., Simth H., Wiggal K. J., Zhang L, Luengo J. I., J. Med. Chem., (2002), 45, 3573.
(5) Agarwal R. K., Singh L., and Sharma D. K., Synthesis, spectral, and biological properties of copper(II) complexes of thiosemicarbazones of Schiff bases derived from 4-aminoantipyrine and aromatic aldehydes, Bioinorg. Chem. and Appl., (2006), 59509, 2006.
(6) Pandey O. P., Sengupta S. K., Mishra M. K., and Tripathi C. M., Synthesis, spectral and antibacterial studies of binuclear titanium(IV)/zirconium(IV) complexes of piperazine dithiosemicarbazones, Bioinorg. Chem. and Appl, (2003), 1., 1, 35.
(7) Quiroga A. G., Pérez J. M., López-Solera I., et al., Novel tetranuclear orthometalated complexes of Pd(II) and Pt(II) derived from p isopropylbenzaldehyde thiosemicarbazone with cytotoxic activity in cis-DDP resistant tumor cell lines. Interaction of these complexes with DNA, J. of Med. Chem, (1998), 41, 9, 1399.
(8) Smith J. E., Talbot D. C., Ber. J. Cancer, (1991), 65, 787.
(9) Hacker M. P., Khokar A. R., Brown D. B., McCormack J. J., Krakoff J. M., Cancer Res, (1985), 45, 4748.
(10) De Lima G.M., Neto J.L., Beraldo H., Seibald H.G.L, Duncalf D.J.,J.of Molec.Struc.(2001), 604, 287.
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3D Alginate Scaffold for Anatomical Aortic Valve Tissue Engineering
Authors: Albert Ryszard Liberski and Magdi H YacoubBackground
Within the field of biomedicine, alginate applications are numerous, from wound healing and cell transplantation to delivery of bioactive molecules. Recently, alginate based biomaterials are entering into clinical trials for the treatment of myocardial infarction (1). Due to its non-thrombogenic nature, this polymer is very promising for cardiac applications, including as scaffold for heart valve tissue engineering. One pivotal property of alginates in this respect is the possibility to form virtually any shapes (films, fibers, beads) in a variety of sizes. Alginate solutions can form gels in mild conditions in the presence of calcium, by displacement of sodium ions and resulting attraction of the alginate molecules. Our aim is therefore to fabricate 3 dimensional (3D) alginate scaffolds mimicking precisely the anatomical shape of human aortic valves, as a substrate for valve tissue engineering and repair (see Fig. 1).
Methods
We used the gelling properties of alginate solutions to obtain scaffolds reproducing the complex geometry of aortic heart valves in a few easy steps. Briefly, the geometrical and structural design of a typical aortic heart valve (2–4) was obtained using Blender software (5). The generated 3D file was converted into stereo-lithography (STL) format and 3D printing performed in Objet Eden260VS - 3d printer (Stratasys, Edina, Minnesota, USA) using light-curable polyacrylate monomers. After printing the supporting material was removed manually which yielded flexible valve-like structure with sinuses of Valsalva and 3 coapting leaflets. Subsequently, agarose moulds were obtained by casting agarose saturated in CaCl2 solution (2% w/w) into the 3D printed form. Finally, alginate scaffold preparation was carried out by immersing the CaCl2-saturated agarose moulds into alginate solutions.
Results
Calcium ions diffused from the agarose mould and effectively cross-linked alginate solution in close vicinity, resulting in an alginate gel layer. The agarose mould could be easily removed in a subsequent step. The resulting alginate structure closely matched the agarose mould geometry and hence the 3D printed replica of a human aortic valve. Moreover by extending the length of mould immersion into sodium alginate solutions, scaffold thickness and composition could be controlled. Such control allowed forecasting further improvement to facilitate cellularisation and tissue formation and to improve mechanical properties.
Conclusion
Alginate can form versatile and tunable hydrogels which can be cast in 3D configurations that mimic the shape of a human aortic valve. As preparation steps can be freely adjusted to incorporate viable cells, such structures could serve as basis for in vitro tissue formation, which would further improve mechanical properties of the hydrogel. In addition, the ease of chemical modification and functionalization of alginate with cell ligands provides rational tools to increase cell interactions and attract cells in situ, which are important steps in the formation of functional valves in vivo.
Overall, this novel and flexible technique that can be readily integrated with other strategies presents an important potential to create the “ideal” scaffold for producing a living valve substitute.
Figure 1. Alginate shaped in tricuspid valve, ventricular view (a), side view (b), hinge - atrial view (C), and open valve view (D). (Scale bars 1 cm).
References
1. Anker SD, Coats AJS, Cristian G, Dragomir D, Pusineri E, Piredda M, et al. A prospective comparison of alginate-hydrogel with standard medical therapy to determine impact on functional capacity and clinical outcomes in patients with advanced heart failure (AUGMENT-HF trial). Eur Heart J. 2015 Sep 7;36(34):2297–309.
2. Chester AH, El-Hamamsy I, Butcher JT, Latif N, Bertazzo S, Yacoub MH. The living aortic valve: From molecules to function. Glob Cardiol Sci Pract. 2014 Jan 1;2014(1):11.
3. Yacoub MH, Kilner PJ, Birks EJ, Misfeld M. The aortic outflow and root: a tale of dynamism and crosstalk. Ann Thorac Surg. 1999 Sep;68(3 Suppl):S37–43.
4. Yacoub MH. In Search of Living Valve Substitutes. J Am Coll Cardiol. 2015 Aug 25;66(8):889–91.
5. Introduction — Blender Reference Manual [Internet]. [cited 2015 Nov 23]. Available from: http://www.blender.org/manual/getting_started/about_blender/introduction.html
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Design an Expert System for the Diagnosis of Pulmonary Tuberculosis
By Rasha BadiPulmonary tuberculosis (PTB) is a common worldwide infection and a medical and social problem causing high mortality and morbidity, especially in developing countries. An expert system for diagnosis of this disease was designed based on expert's knowledge for providing decision support platform to assist fresh graduator (inexperienced) physicians, and other healthcare practitioners to arrive the final diagnosis of TB more quickly and efficie ntly especially in rural areas. Information about pulmonary tuberculosis and its symptoms and treatment from doctor who are specializing in the diagnosis and treatment of tuberculosis were collected.
The system was built using C sharp language and artificial intelligence based expert system in coordinated manner help in the diagnosis of tuberculosis disease and assistance in giving the necessary treatment In addition to giving advice to patients.
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Comparative Expression Profile of Organic Cation Transporters in Diabetes and Cancer: Effects of Metformin
Authors: Rohit Upadhyay, Christopher R Triggle and Hong DingBackground and Aim
Organic cation transporters have critical role for absorption, distribution, metabolism, and elimination of many endogenous small organic cations as well as a wide array of drugs. These transporters act as uptake transporters (OCT1, OCT2, OCT3 and PMAT) or efflux transporters (MATE1 and MATE2) for cationic drugs including Metformin. PMAT, OCT1 and OCT3 are expressed in Intestine and may be involved in Intestinal transport of metformin. OCT1, OCT3 and MATE1 expression in liver may facilitate hepatic uptake of metformin. In Kidney OCT1, OCT2 and PMAT may act as influx transporter while MATE1 and MATE2 may act as efflux transporters. Metformin is the first line of drug for diabetes and may have beneficial effects in cancer treatment. Expression profile of metformin transporters may have crucial role in pharmacokinetics of the drug. At present there is very limited data for the expression of these transporters in different cell lines and db/db mice. No in-vitro data is present for comparative expression of these transporters in primary endothelial cells vs. cancerous cells and effect of high glucose/metformin treatment on the expression of drug transporters is still unknown. Therefore, we aimed to investigate the expression levels of OCT1, OCT2, OCT3, MATE1, MATE2 and PMAT in normal/cancerous cell lines as well as mice organs (intestine, liver and kidney) under normo/hyper-glycemic condition and low/high dosage of metformin treatment.
Material and methods
Different cancerous/non-cancerous cell lines (HUVECs, MCF7, PA1, Huh7, HEK293T and MMECs) were cultured in normal/high glucose mediums and treated with low/high dosage of metformin for 7 days. Cells in early passages (P3 to P6) were used and experiments were replicated five times. Mice samples (liver, kidney and small intestine) were collected from wild type (C57BL/6J) and db/db mice after treatment with metformin for 6–8 weeks. Total RNA and proteins were isolated from cell line/mice organ samples and gene/protein expressions were estimated by using real-time PCR and western blotting. Gene expressions were leveled by the endogenous controls (beta-actin and GAPDH) and comparative CT values were estimated. Relative gene expressions were calculated through 2-(ΔΔCT) method. Western blot analysis was done after normalizing densitometry data of transporter proteins with endogenous control protein (β-actin or GAPDH).
Results
We detected expression of all selected metformin transporters in endothelial cells and in majority of cancer cell lines. Comparative gene expressions of metformin transporters in all of the selected cell lines were estimated. The levels of OCT1/OCT2 expressions between non-cancerous/cancerous cell lines were significantly modulated (P
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Anti-Neoplastic Effects of Annonacin against Renal Cell Carcinoma
Authors: Shankar Munusamy, Akila Gopalakrishnan, Sreenithya Ravindran, Feras Alali and Ali H. EidBackground and Objectives
Renal cell carcinoma is the most common and lethal form of all renal cancers, and accounts for 4.1% of all cancer cases in Qatar. Mutations to Von-Hippel Lindeau (VHL) gene in renal cells activates hypoxia inducible factor-1 alpha (HIF-1α) response pathway, and contributes to increased proliferation and progression to renal cell carcinoma. Hence, chemotherapeutic modalities available to treat renal cell carcinoma are targeted toward modulation of the VHL-HIF response pathway. Annonacin, a potent cytotoxic mono-tetrahydrofuran acetogenin found in Annonaceae plants, has been demonstrated to exert anticancer activity against breast cancer; however, its therapeutic potential against renal cell carcinoma is yet to be determined. Hence the objective of this study is to investigate anti-neoplastic potential of annonacin in renal carcinoma cells.
Methods
We investigated the effect of annonacin - at concentrations ranging from 0.5 to 2 μM – on cell viability (using MTT assay and Alamar blue assay), and the protein expression of markers of HIF signaling pathway (HIF-1α), mTOR pathway (Thr-389 phosphorylation of p70S6 kinase), cell cycle progression (p21 levels), and apoptosis (caspase-3 expression) in CaKi-2 cells, a human renal carcinoma cell line. The cells were treated with annonacin for 24 or 48 hours and assessed for the aforementioned parameters.
Results
hour annonacin treatment caused a significant and dose-dependent decrease in the viability of CaKi-2 cells, i.e., 42% in 0.5 μM, 36% in 1 μM and 29% in 2 μM annonacin treatment groups as compared to control set at 100%. This was further confirmed by Alamar blue assay, which revealed a significant decrease in the viability of CaKi-2 cells upon treatment with annonacin for 48 h. The expression of HIF-1α was reduced by 68% at 24 h in CaKi-2 cells treated with 2 μM annonacin. In addition, the expression of p21 (a key molecule that inhibits transition of cells from G1 to S phase in cell cycle) was induced by 1.34-fold in 0.5 μM annonacin-treated cells indicating an arrest in G1 phase of cell cycle. This was further confirmed through cell cycle analysis using Tali cytometer, in which annonacin treated groups (0.5 μM and 1 μM) showed cell cycle arrest at G1 phase, i.e., 57% of cells in G1 phase with 0.5 μM annonacin treated vs. 7% of cells in G1 phase in control group. In addition, a dose-dependent decrease in the phosphorylation of p70S6 kinase (a downstream target of mTOR) was observed with annonacin treatment at both 24 and 48 h end-points. This suggests that treatment of annonacin has possibly led to the inhibition of mTOR, in addition to suppression of HIF-1α activation, and underscores the cross-talk between HIF pathway and mTOR signaling pathway in renal cell carcinoma.
Conclusions
Our findings demonstrate that annonacin treatment (at concentrations ranging from 0.5 to 2 μM) inhibits HIF-1α and mTOR activation and causes cell cycle arrest at G1 phase and induces apoptosis in renal cell carcinoma. These findings indicate that annonacin exerts anti-cancer effects via modulation of HIF and mTOR signaling pathways, resulting in alterations in the cell cycle and activation of apoptosis in renal cell carcinoma. In conclusion, our study for the first time unveils the therapeutic potential of annonacin to inhibit the progression of renal cell carcinoma. Further studies in vivo are required to establish its efficacy to treat patients with renal cell carcinoma.
Funding Source
This study is supported by an intramural grant (#QUUG-CPH-CPH-14/15/7) funded by the Office of Academic Research, Qatar University, Doha, Qatar.
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Design of a Time-Frequency Algorithm for Automatic Eeg Artifact Removal
Authors: Boualem Boashash, Samir Ouelha and Sadiq Ali Maqsood1) The method
The injuries suffered by newborns during birth are a major health issue. To improve the health outcomes of sick newborns using EEG measurements, a number of recent studies focused on the use of high-resolution Time-Frequency Distributions to extract critical information from the collected signals [1]. Several algorithms have been proposed. A major problem in the implementation of such algorithms for fully automated EEG signal classification systems is caused by artifacts. In particular, previous studies have shown that a respiratory artifact looks like a seizure signal and can be misinterpreted by the automatic abnormality detection system thus resulting in false alarms. Hence, the successful removal of the artifacts is important, as shown in several previous studies [2]; and, there are two basic approaches for this: (1) use machine learning technique to detect and reject EEG segments corrupted by artifact; but this would result in the loss of EEG data [2]. (2) Correct EEG segments corrupted by artifacts; some artifacts can be corrected by a simple filter in a frequency domain, e.g. notch filter can be used to remove 50 Hz noise. This approach does not require any reference signals. For more complicated cases, when the spectrum of artifacts overlaps with the spectrum of EEG signals, blind source separation (BSS) algorithms can be used. Typically a multi-component EEG signal is transformed into a linear combination of independent components (that can be interpreted as channels (ICs)) by blind source separation techniques such as the independent component analysis (ICA) or canonical correlation analysis. The independent channels that are corrupted by artifacts are identified either manually or automatically using correlation information from a reference signal. The artifact free signal is then constructed by combining only artifact-free ICs.
The abovementioned artifact correction approach has two problems:
1) Sometimes, multicomponent or multi-channel BSS methods fail to split artifacts from sources, i.e. some independent components may have some useful EEG information.
2) In some cases only single component or channel recordings are produced.
The empirical mode decomposition (EMD), a time-frequency (TF) filtering algorithm has been used to remove artifacts from single channel multicomponent recordings as well as remove artifacts from ICs obtained as results of ICA algorithm [3]. The EMD splits a single channel multicomponentchannel multicomponent EEG recording or the given IC into a number of intrinsic mode functions (IMFs), thus converting a single channel multicomponent recording into several monocomponent signals that can be interpreted as a multi-channel EEG signal. One way to remove artifacts is to simply discard IMF sources in the signal reconstruction [4]. Another approach is to treat IMFs as separate components (or channels) and then apply multi-component (or multi-channel) BSS algorithms to remove artifacts [5].
From a signal processing perspective, the EMD cannot resolve close signal components in the time-frequency (t,f) domain. So, if some artifacts are closely placed to EEG signals in the (t,f) domain, the EMD will fail to separate them.
In this study, the aim is to design a new EEG artifact removal algorithm that uses TF filtering and high resolution time –frequency distributions (TFDs) to extract close signal components.
The key steps of the proposed method are given below:
1. Analyze EEG signal using a high resolution TFD;
2. Localize the signal components in the (t,f) domain by estimating their IF using component linking method [6].
3. Once the signal components are located in the (t,f) domain, they can be extracted by TF filtering. In this study, the fractional Fourier transform is used as a TF filter to separate signal components [6].
4. Identify signal components corrupted by artifacts using prior information or correlation from reference signals.
5. Once the artifactual components are identified, they can be removed during the inverse blind source separation (BSS) transformation by simply subtracting them from the EEG signal.
2) Results and discussions
The proposed TF filtering algorithm can be used to remove respiratory artifacts that cause a major is a major problem in the automated implementation of EEG signal classification algorithms as its morphology is similar to that of seizure.
Let us consider a simulated EEG seizure signal corrupted by the respiratory artifact. The EEG signal is then given by
s(t)=Seiz(t)+artif(t) (1)
Previous studies have shown that aan EEG seizure signal can be modeled by a non-linear FM signal which generalizes simpler piece wise linear FM models used in earlier studies i.e.:
Seiz(t)=cos(2π[1e(–6) t3+0.075t]) (2)
The respiratory artifact which appears as a quasi-regular rhythmic activity is modeled as a pure sinusoid.
artif(t)=cos(2π0.052t) (3)
This signal is sampled at 32 Hz. The simulated signal, s(t), is analyzed using the adaptive directional TFD (ADTFD) as shown in Figure 1 [6]. The proposed TF filtering algorithm is then applied to extract signal components. The extracted components are shown in Figure 2. The EMD is also applied to separate signal components. The EMD algorithm decomposed the given signal into 6 IMFs. The IMFs closest to the desired seizure and artifact signals are plotted.
Experimental results show the EMD fails to correctly extract sources from time duration 0 to 4 s as two sources are close to each other in the (t,f) domain during this time interval. When signal components become well separated in the (t,f) domain, i.e. from 4-s to 8-s, the EMD algorithm accurately extracts the signal components. The proposed TF filtering method yields an improved superior performance as it correctly extracts the sources even when they are close to each other in the (t,f) domain. The superior performance achieved by the proposed method is due to the selection of a high-resolution TFD that results in an accurate IF estimation for close signal components.
3) Conclusion and Future Works
A time-frequency filter is designed for the removal of EEG artifacts. The approach is applied to the removal of simulated respiratory artifacts from simulated signals. The algorithm assumes that the artifacts and EEG background have TF signature that are non-overlapping in the (t,f) domain. The algorithm can be extended for more realistic situations by using methods that can estimate the IF of intersecting signal components using directional information for example. Moreover, the proposed TF filtering algorithm (just like the EMD) decomposes a signal into a number of components thus making a single channel multicompoonent signal into several monocomponents that can be interpreted as a multi-channel signal.
Bibliography
[1] B. Boualem, G. Azemi and J. M. O'Toole., “Time-frequency processing of nonstationary signals: Advanced TFD design to aid diagnosis with highlights from medical applications.,” Signal Processing Magazine, IEEE, vol. 30, no. 6, pp. 108–119, 2013.
[2] B. Boashash, G. Azemi and N. A. Khan, “Principles of time–frequency feature extraction for change detection in non-stationary signals: Applications to newborn EEG abnormality detection,” Pattern Recognition, p. 616–627, 2015.
[3] M. De Vos, W. Deburchgraeve, P. Cherian, M. Vladimir, R. Swarte, P. Govaert, G. H. Visser and S. Van Huffel, “Automated artifact removal as preprocessing refines neonatal seizure detection,” Clinical Neurophysiology, vol. 122, no. 22, pp. 2345–2354, 2011.
[4] H. Zeng, S. Aiguo, Y. Ruqiang and H. Qin, “EOG artifact correction from EEG recording using stationary subspace analysis and empirical mode decomposition,” Sensors, vol. 13, no. 11, pp. 14839–14859, 2013.
[5] B. Mijovic, M. De Vos, I. Gligorijevic, J. Taelman and S. Van Huffel, “Source separation from single-channel recordings by combining empirical-mode decomposition and independent component analysis,” IEEE Transactions on Biomedical Engineering, vol. 57, no. 9, pp. 2188–2196, 2010.
[6] B. Boashash, A. N. Khan and T. Ben-Jabeur, “Time–frequency features for pattern recognition using high-resolution TFDs: A tutorial review,” Digital Signal Processing, vol. 40, pp. 1–30, 2015.
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Reversal of Right Ventricular Hypertrophy and Dysfunction by Treprostinil in a Rat Model of Severe Angioproliferative Pulmonary Arterial Hypertension
More LessPurpose
Pulmonary arterial hypertension (PAH) is a devastating cardiovascular disease of the pulmonary vasculature that remains poorly understood. Despite a number of available FDA approved drugs, survival remains low, reaching an estimated 5-year survival as low as 27%. This severe disease is characterized by dysfunction and eventual failure of the right ventricle (RV) of the heart. The main focus of therapeutic strategies thus far has been to target the pathways of pulmonary vascular remodeling that lead to the hypertensive phenotype. It is not known however, if there is an added therapeutic benefit in targeting the RV directly. Prostacyclin analogues are among the most widely used therapies for PAH. However, it is unknown whether they confer protection exclusively via attenuating pulmonary vascular remodeling and constriction or if RV myocardio-specific mechanisms are also involved. Moreover, their use in severe models of PAH has not been adequately tested. Insight into these two major unknowns could not only blaze the trail of new effective therapies for PAH to improve survival, but would also open new avenues for targeting other major forms of heart failure. To address gaps in knowledge of the underlying responses to prostacyclin, the analogue treprostinil was used in a pre-clinical rat Sugen-hypoxia (SuHx) model of angioproliferative severe PAH that closely resembles the human disease.
Methods
Male Sprague-Dawley rats (300g) were implanted with ALZET osmotic pumps containing vehicle or treprostinil (900 ng/kg/min), injected concurrently with a bolus of Sugen (SU5416; 20 mg/Kg) and exposed to 3 wk hypoxia (10% O2) followed by 3 wk normoxia (21% O2). RV function was assessed using pressure-volume loops measured using an admittance catheter and hypertrophy assessed by Fulton Index (FI; RV/LV+Septum wet weight).
Results
Treprostinil significantly reduced SuHx-associated RV hypertrophy and rise in systolic pressure (FI: 0.26 ± 0.02, 0.58 ± 0.04 & 0.37 ± 0.05, P
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Body Mass Index and Pattern of Diabetes in Qatar – A Retrospective Study of 529 Patients with Obesity
Authors: Manik Sharma, Saad Al Kaabi and Rajvir SinghBackground
Qatar ranks among the top countries with highest prevalence of diabetes and obesity. Obesity is generally measured by a Body mass index (BMI). BMI has been found to be independent risk factor for development of diabetes. Also, diabetes when associated with obesity leads not only to its poor control but also causes increased long-term complications from diabetes.
Aim
To delineate the pattern of obesity among residents of Qatar and to classify them as per World Health Organization criteria. Secondary objectives included assessing the pattern of diabetes with increasing body mass index.
Method
All consecutive obese adult patients attending pre-surgical screening endoscopy clinic over an 18 months period were included. Patients under 14 years of age and those who had previous surgical treatment were excluded. Body mass index (BMI) was calculated as per standard criteria [weight (Kg)/Height (meters) 2] and was then classified as per World Health Organization criteria. Overweight, Type 1, Type 2 and Type 3 obesity was defined as BMI more than >25, >30, >35 and >40 respectively. Diabetes was defined as fasting plasma glucose ≥ 7 mmol/l. All patients underwent gastroduodenoscopy to assess the presence of helicobacter infection and evidence of mucosal inflammation prior to surgical treatment of obesity.
Results
A total of 529 patients with a mean age of 36.8 years were included 31.4% of obese patients were in 15–30 year age group. The mean weight, height and BMI were 123.6 Kg, 1.65 meters and 45.2 respectively. Overweight, Type I, II and III obesity was seen in 3 (0.6%), 30 (5.6%), 95(17.8%) and 401 (76%) patients respectively. Overall 34.5% had associated comorbid diseases. Type 2 Diabetes were seen in 11.1% of the patients. Diabetes was seen in 0%, 26.7%, 8.4% and 6.7% in overweight, Type I, Type II, Type III obesity respectively. Diabetes was significantly lower among very severely obese patients (Type III) as compared to those with overweight, moderately and severely obese patients (Overweight, Type I and II) (27/401, 6.7% versus 16/84,19% p = . 03).No correlation was found related to age, sex or helicobacter infection.
Conclusions
Among the residents of Qatar, 11% of obese patients were found to have diabetes. The highest prevalence of diabetes was seen in people with BMI of 25–30 (type 1 obese people). Diabetes prevalence did not increase with increasing obesity.
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How MERS-CoV Helped Overcome Communication Barriers in Qatar
Background
As a conventional type of communication, health education usually face several barriers that make its outcome fall short. Among many, lack of interest, distraction, and rejection are well documented barriers to engaging audience in a communication process leading to behavioral change. Despite the novel corona virus which was responsible for the Middle East Respiratory Syndrome (MERS-CoV) created public concerns, it, on the other hand, paved the road to effective health education via raising receivers’ attention. With the aim to highlight the context and factors attributed to educate the public during epidemics, this study documented how the outbreak of MERS-CoV offered valuable opportunities to communicate critical educational messages on the recommended preventive behaviors and practices.
Methods
In this retrospective study, we documented the timeline of MERS-CoV key events in Qatar, along with the disseminated health education messages that were captured by the print media during the period Sep 2012 through Nov 2013.
Results
The media documented that one of the first two reported cases worldwide was a Qatari national. A significant turn of the public's risk perception about MERS-CoV took place when studies documented that camels are thought to play critical role in the virus transmission to humans. Six months after the identification of the first case, this relationship was confirmed when it was declared that the MERS-CoV was isolated from camels in Qatar, provided that raising camels is a social norm and an embedded cultural practice in the country and across the region. Nevertheless, MERS-CoV cases and deaths continued to be reported.
Out of 153 news stories reported on MERS-CoV, 12 major developments either reporting confirmed cases or deaths were identified in Qatar. Two Press conferences, sixteen press releases, and two interviews were counted, all from competent authorities. As the novel virus captured the media attention, all aspects of the new virus were extensively reported, ranging from the basic information about the virus traits, the clinical signs and symptoms, treatment outcome of cases, to the ongoing researches, epidemiological findings of the most vulnerable persons, the zoonotic nature of the disease, and the recommended course of action. The public pressing demand for updates and information drove the media interest to arrange talk shows and interviews with the high health officials to give firsthand accounts about the virus and the prevention and control efforts.
While fresh MERS-CoV cases were reported from The Kingdom of Saudi Arabia, fears were growing that Hajj season may allow for a large scale spread of the virus. The publicized health education messages at that time called upon the most-at-risk group to postpone going to Hajj and Umrah, be assessed for medical fitness, get vaccinated against seasonal flu, and avoid the crowded and badly ventilated areas. This group involved elderly and patients with chronic illnesses or impaired immunity. Afterwards, frequent hand washing and drinking pasteurized camel milk or consuming well-cooked camel meat was advised along with minimizing close contact with symptomatic persons.
Discussion
The timeline of MERS-CoV events along with the communication activities in response to them gave a strong indication about the correlation between the media interest and public concern of a particular subject in hand, and the opportunities created by this momentum to communicate key information and recommended course of action by the competent authorities to satisfy the public's needs on the other hand.
Three main factors influenced how MERS-CoV was perceived in Qatar: its unfamiliarity, the epidemiological link to camels, and the way media had portrayed it. Like any other exotic risk, MERS-CoV's acknowledged unfamiliarity even to health officials seduced the media to fill the uncertainty vacuum by persistently focusing on the similarities with the deadly SARS epidemic that erupted in 2002, thereby allowing for scary scenarios to seed in the public's imagination. It was then announced that a kind of relationship had been established between the infected persons and camels before a Qatari scientific team declared that the life MERS CoV was isolated from an infected camel. The immediate result of this perceived risk was heightened public attention and interest. However, the repeatedly announced symptoms of suspected cases allowed for better identification and induced voluntary reporting of cases to healthcare facilities.
Substantial proportion of the communication process usually devoted to achieve the preparatory steps of seizing the audiences’ attention besides making sure that the content matters to them. Whereas the public need for information was being satisfied through news releases and press conferences, health education messages constituted a prime ingredient of the communication content.
Despite of the denial and stigma linked to the unfamiliar disease, the communicated health messages had a tangible influence on giving the target audience the information necessary to take decisions on the personal and community level. According to records of the medical Hajj committee, response to the pre-travel medical assessment and vaccination was remarkable. Patients complied with the isolation requirements. Nevertheless, Information, Education, and Communication (IEC) materials were not prepared prior to the press conferences, indicating missed opportunities.
After all, no significant rejection to the recommended course of action was identified.
Study limitations
As this study was based on reviewing the content of print media, other types of mass media were excluded. Moreover, it was important to determine the extent to which the target communities relied on official press releases and press conferences to gain information related to MERS-CoV.
Conclusion
Couple of factors contributed to the successful engaging of the target communities to adopt the recommended course of action: the perceived risk of the novel virus which made the public highly attentive, the timing of the health education messages that usually coincided with the critical disease developments, and the assignment of credible well-known resource officials from the competent authorities. As the public uptake of behaviors recommended by trusted authorities tends to be very high during epidemics, efforts should be made on designing health education messages to be injected within media products like press conferences and press releases during early preparedness phases.
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A Hexokinase II Derived-Cell Penetrating Peptide Targets the Mitochondria and Triggers Apoptosis in Cancer Cells
More LessMost cancers are characterized by a high rate of glycolysis and overexpression of mitochondrial-bound isoforms of hexokinase, an enzyme that phosphorylates glucose in an ATP-dependent manner and this commences the first committed step in glucose metabolism. Type II hexokinase (HK II) plays a paramount role in metabolic reprogramming in tumors and its association with the voltage dependent anion channel (VDAC), a major channel for transport of metabolites and ions across the mitochondrial membrane, inhibits apoptosis in cancer cells and is therefore an important therapeutic target. A peptide corresponding to the mitochondrial membrane-binding N-terminal domain of HK II (pHK II) can potentially compete with the endogenous protein for binding to mitochondria and trigger apoptosis. In vitro studies in HeLa cells showed that coupling of pHK II to a short penetration accelerating sequence (Pas: FFLIPKG) enhances the peptide's intracellular delivery and cytosolic release, followed by localization to the mitochondria. Cell viability assays revealed that pHK II-pas was considerably more effective in inhibiting cell growth compared to pHK II alone. Moreover, pHK II-pas displayed an enhanced ability to deplete cellular ATP levels and induce apoptosis. Mitochondrial function analysis showed that exposure to pHK II-pas peptide resulted in a significant decrease in glycolytic capacity and glycolytic reserve, as well as basal oxygen consumption rate (OCR), spare respiratory capacity, and ATP turnover. Importantly, these effects were correlated with HK II release from mitochondria. Thus, the mode of action of pHK II-pas involves release of the HK II protein from the mitochondrial membrane resulting in loss of mitochondrial membrane potential, decreased cellular ATP levels and finally apoptosis. Our results underline the potential of the pHK II-pas cell-penetrating peptide (CPP) as an innovative and effective anti-tumor therapeutic strategy.
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How Common is Bacterial Meningitis in Patients with Urinary Tract Infection below the Age of 60 Days?
More LessIntroduction
Urinary tract infection (UTI) is one of the most common pediatric infections. UTI may be associated with bacteremia and even meningitis in small babies, warranting full septic work up including a cerebrospinal fluid (CSF), especially in infants below the age of 60 days. Literature regarding the co-existence of meningitis in infants diagnosed with UTI is conflicting. It is critical to be able to correctly identify and treat any co-existing meningitis, as both the choice and duration of antibiotic used for UTI, is often insufficient to effectively treat meningitis.
Objective
The primary objective of this study was to determine the rate of co-existing bacterial meningitis in infants below the age of 60 days with a diagnosed urinary tract infection (UTI) and to determine if age, sex and prematurity and bacteremia were risk factors.
Method
A retrospective observational study was conducted at Hamad General Hospital, a tertiary medical institution in the State of Qatar. Patients under the age of 2 months hospitalized with a first episode of UTI from January 1, 2008 to December 31, 2013 were included in the study. UTI was defined as urine culture growing a single organism, with a colony count of greater than 103, where in the urine sample was obtained by either catheterization or supra-pubic aspiration. Infants with pre-exisiting clinical conditions like spina bifida or meningomyelocele and those diagnosed with congenital renal anamolies, were excluded from the study because of their higher likelihood of developing UTI. Infants with a questionable diagnosis of UTI (not in accordance with American Academy of Pediatrics definition of UTI) were also excluded.The study was approved by the Medical Research Center at Hamad Medical Corporation.
Results
113 patients met the inclusion criteria. 51 patients (44.3%) were neonates (0?28 days old) and 64 patients (55.7%) were between the age group of 29 to 60 days. 43.5% of the infants were male, and most (86.1%) were term. All 113 patients had culture proven UTI. The commonest pathogens causing UTI were Escherichia coli (38%), Klebsiella pneumoniae (15%), Enterococcus faecalis (13%), Group B Streptococcus sp(7%), and Citrobacter (6%). As per the routine practice in our institution, blood culture was ordered in all but one patient. Among these 112 patients, 3 (2.6%) had bacteremia. All 3 patients were Term female babies, 2 of them were neonates and 1 was between 29 to 60 days of age. Of the three pts who had a positive blood culture, CSF study was done in two babies, which was negative and 1 patient's family refused CSF study. A cerebrospinal tap was done in 78 patients i.e. 69% of the sudy population. None of these patients had a postive CSF culture. Physicians were more likely to order a CSF study in babies who were neonates (80% had a CSF study, as opposed to 60.3% of babies in the 29 to 60 day age group).
Conclusion
Our study demonstrated that in the 78 patients with culture proven UTI, who had a CSF study, none of the patients had co-existing bacterial meningitis. Our results are reflective of several other studies which also show a low risk of meningitis in patients with UTI. We tried to overcome some of the limitations of these studies by maintaining very strict criteria for diagnosing UTI. CSF study is a part of the septic work up in neonates. In contrast for patients between the age group of 29 to 60 days, more selective approach to lumbar puncture is warranted.
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Double Network Hybrid Hydrogels with Nanocomposite Structures for Cartilage Tissue Engineering Applications
Authors: Ali Mohammed, Julian R Jones and Theoni GeorgiouHydrogels have become a popular source of research for cartilage tissue engineering but have been limited by their brittle nature at high water contents. Double network hydrogels (DNHG) are innovative materials that possess the ability to hold high water content whilst maintaining high mechanical strength, but require more accurate control over these properties. This study aims to achieve this goal by introducing a new concept by incorporating functionalized sol-gel nanoparticles (xSNP) as macro cross linkers rather than the conventional chemical cross linkers. DNHG are formed by a 1st network (1NW) polyelectrolyte and 2nd network (2NW) neutral polymer. This study investigates two separate DNHGs; polyacrylic acid (PAAc) and poly 2-acrylamido-2-methylpropane sulfonic acid (PAMPS) were the 1NW, chosen for their biocompatibility and hydrophilic nature. They were cross linked with amino-SNP (ASNP) and vinyl-SNP respectively. Polyacrylamide was chosen as the 2NW for both gels for its intrinsic strong mechanical properties. The aim of this study is to understand the effects of size and concentration of xSNP as a novel cross linking agent in DNHG for precisely controlling the properties of the gels. SNPs of 20, 50 and 100 nm were synthesized by the Stöber process, and functionalized in situ with 3-aminopropyl triethoxysilane and vinyl TEOS. The xSNP concentrations in the DNHGs were 0-50 wt. ? of the 1NW. SNPs were studied under TEM, SEM, FTIR, DLS, zeta potential and confocal microscopy to confirm size and functionalization. 1NW polymers were polymerized and cross linked in situ with xSNP under UV light; ASNP used carbodiimide chemistry to cross link with PAAc and VSNP was cross linked using a UV initiator. 1NW were soaked in 2NW solution and UV polymerized to form the DNHG. FTIR, swelling and water uptake studies were performed on heat/vacuum dried DNHGs. Compressive and dynamic mechanical properties were studied for fracture cyclic loading. DNHG cross sections were used for SEM and TEM imaging. Increasing size and concentration of xSNP caused a reduction in both water up take and swelling properties, providing evidence for higher cross linking in the DNHG. Water uptake ranged from 1230 ? for the control (0 wt. ? xSNP) to 750? for 50 wt. ? with 100 nm VSNP. Water content reduced from 93? for the control to 76? for 50 wt. ? with 100 nm VSNP, in the range of natural cartilage water content. Compressive strengths of the DNHGs increased with increased ASNP conc. and size up to a fracture stress of 15 MPa
with 75? water content, providing evidence that the SNPs are acting as cross linkers in the 1NW rather than fillers. Cross sections of the DNHGs under SEM and TEM show homogenous dispersion of xSNP within the structure, indicating successful incorporation. FTIR data of the DNHG after 3 drying and saturation cycles show Si-O-Si bands supporting the evidence of xSNP incorporation into the DNHG. These results show potential for further research and application of sol-gel nanoparticles in hydrogel applications. The best hydrogels from this reserach were chosen to be optimised. As the photopolymerisations were done under open atmosphere it is understood that atmopsheric O2 will interact with the monomer solution and inhibit the polymerisation from completing. This leads to shorter chain polymers and a lower degree of monomer to polymer conversion; hence leading to less polymer entanglement and lower mechanical integrity. Oxygen can be depleted from the monomer system by introducing glucose oxidase (GOX). Oxygen is eaten up by this enzyme in the presence of glucose to produce hydrogen peroxide. Full oxygen depletion is reached at 200 nM GOX, and 100 nm glucose. The enzyme works best at pH 5-6 therefore it was not possible to optimise the first network polymer AMPS.
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Using the Transtheoretical Model to Enhance Self-management Activities in Type 2 Diabetic Patients: A Systematic Review
By Yara ArafatBackground: Many health organizations are always highlighting the importance of health promotion, and disease prevention, due to the high incidence of chronic diseases that are spread worldwide and increasing continuously. One of the most prevalent chronic diseases is diabetes mellitus (DM). Many studies conducted in developed countries proved that lifestyle changes in patients resulted in a reduction in the prevalence of diabetes, and that there's a link between DM, and behavioral, clinical, and economical outcomes. Furthermore there was an affiliation between knowledge, attitude, and practice (KAP), and DM. Even though self-management of type 2 diabetes is necessary in order to improve quality of life, many patients still have a problem with being able to self-manage diabetes. Many models and interventions were tested to enhance self-management but none were successful so far. Self-management is a socio-behavioral problem, and the use of a model such as the transtheoretical model (TTM) could improve it. TTM is one of the most commonly used behavioral models. It was first introduced in the 1980s by Prochaska and DiClemente to explain how people change their behavior, but not why they change. It is a model of choice that focuses on the decision making capabilities of individuals. This model is different to alternative approaches to health promotion in that its primarily focus is not on social and biological behavioural influences. It is a psychological health promotion model about the intention of change. It is a model of choice that focuses on the decision making capabilities of individuals. It first uses the baseline information, with an aim to alter self-efficacy, cues, or other psychosocial factors using five TTM principles: Precontemplation, Contemplation, Preparation, Action, and Maintenance. Objective: The objective of this study is to collect enough evidence using a systematic review in order to assess the use of TTM in improving self-management activities in type 2 diabetic patients. Self-management activities include following a healthier diet, exercising more regularly, and an enhanced medication adherence. Methods: The systematic review was conducted between February and May 2015. PubMed (n = 83), Medline (n = 126), Science direct (n = 985), and Cochrane (n = 62) were the databases searched with predefined terms relating to TTM interventions for type 2 diabetic patients. A second extensive search was conducted using google, and google scholar (n = 2) to retrieve articles relevant to the research. The search strategy aimed to identify articles in which the Transtheoretical model had been applied and which had been published in English between 2000 and March 2015. In order to ensure that all potentially relevant articles had been identified, the search terms included “Transtheoretical model”, “Sociobehavioral”, “social changes”, “diabetes”, and “self-management”. All study designs were included and no limits were set to articles comparing the behavioral model to other approaches. The methods used for this review followed the PRISMA statement (Preferred Reporting Items for Systematic Reviews and Meta-Analyses). The systematic search was conducted in March 2015. The initial search of the above strategy yielded 1,153 articles. These articles were reviewed by the primary author for relevance to the aims of the review. Retained articles were then assessed for relevance to the aims based on the title and the abstract using the inclusion criteria. Articles identified as potential for inclusion were then retrieved. Each step during the selection process was conducted by two researchers, and in case of disagreement, consensus would be reached with the aid of a third researcher. Results: There was consensus in the review team that the 10 papers met the inclusion criteria. The 10 studies included were published between 2003 and 2011, and were conducted in the US (n = 6), Canada (n = 1), Trinidad and Tobago (n = 1), Scotland (n = 1), and one was unspecified. In all 10 studies, the majority of participants at baseline were at the Precontemplation/Contemplation or Preparation stage, and after the TTM intervention the majority of patients were at the Action or Maintenance stage. Four studies did not specify which stage had the highest number of participants at baseline and post TTM intervention. In one study, the highest number of participants was at the preparation stage (39.1%) at baseline, and after the TTM intervention the highest number of patients was in the action phase (45.7%) indicating an advancement through the stages of change. Moreover, in 4 studies most of the patients at baseline were in the pre-action stage, but at follow-up after the TTM interventions most of the participants moved to the action or maintenance stage. In one study, the greatest number of participants was at the action/maintenance stage pre- and post- the TTM intervention. All studies demonstrated some positive outcomes self-management due to implementing TTM. Four studies reported a significant reduction in glycosylated hemoglobin (HbA1c), 5 studies reported improvements in diet after TTM, and Participants exercised more in 2 studies. In one study there was progress towards reaching participants’ goals whether it's better adherence, diet, or more exercise. However, using the TTM had no change on medication use in any of the studies included. Moreover, Different study designs were used in all studies. 2 studies were pre-test/post-test. In addition, there were 3 Randomized controlled trials (1 was an RCT, 1 was a randomized split plot design where there was a group receiving the usual care and another receiving the intervention, and another study was a cohort randomized controlled prospective trial). One study was a quasi-experimental study. Three studies were reviews; one was a preliminary study which is an economic evaluation of a theoretical cohort of patients. The other one was a study describing how resources and supports for self-management (RSSM) and strategies of the transtheoretical model intersect to produce a comprehensive approach resulting in cutting-edge diabetes Program, and the last review was determining the impact of TTM in changing the unhealthy dietary habits of type 2 diabetic patients. Moreover, one article followed a cross sectional study design which consisted of questionnaires. Conclusion: Ten articles using TTM to self-manage type 2 diabetes were identified and critically reviewed. The narrative findings from this systematic review provide evidence that TTM interventions are effective in promoting exercise, and encouraging participants to pursue a healthier diet. However, the effect of TTM on medication adherence has not been clearly identified yet, and it should be studied in future research.
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Development and Validation of an Allelic Frequency Database for Qatari Population using 13 Rapidly Mutating Y-Str Multiplex Assay
More LessDifferentiating male lineages using non-recombining Y-chromosomal genetic markers is highly informative for tracing human migration and for forensic studies. Recently, it has been shown that the level of male lineage resolution can be enhanced by analysing Rapidly Mutating (RM) Y-STRs. The aim of this study was to develop an allelic frequency database for Qatari population to evaluate the resolution power of 13 RM Y-STRs. The overall haplotype diversity (HD) was 100% It was found that the markers which contributed the most toward high HD were DYF399S1 and DYF403S1a/b. Together with their value for paternal male relative differentiation, these RM Y-STRs will be a valuable asset for forensic casework. AMOVA test was performed between Qatari population in comparison to Gulf countries, Middle East, and several worldwide population data sets. FST values were also calculated. Geography was found to account considerably for the pattern of population sub structuring. The RM Y-STR markers showed remarkable haplotype resolution power in the Qatari population, high gene diversity and sufficient robustness for a diverse range of applications.
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Prevalence of Gastrointestinal Protozoa in Feral Cat Population in Qatar
Introduction: Doha city has a high feral cat population that is estimated to outnumber its human inhabitants by 2-3:1 with a total population of 2-3 million cats according to Qatar Cat Control Unit (QCCU). Doha had a significant rodent problem for decades as in many cities throughout the world. It was difficult to control this huge rodent number. Therefore, cats were introduced in the 1960s, but without any consideration of the possible knock-on effects to human health. Introduced cats have colonized and reproduce rapidly around food and water resources in both urban and rural areas. It is known that cats are natural host for a wide range of helminths and protozoa. Since there were no plans to eliminate cats after they have been introduced to the country, the density of cats increased in an uncontrollable manner. This high cat population has an obvious risk for human and different diseases such as toxoplasmosis would be expected. Hospital records show that human toxoplasmosis is quite widespread in the city, with up to 35% of women of childbearing age being reported to be seropositive, and 41% of the elderly persons of both sexes in the population. These findings highlight the role cats might be playing in the transmission of protozoa in the society. Cats are also hosts to other closely related species of intestinal protozoa. For example, cats can harbour Isospora spp., Cryptosporidum felis, Giardia intestinalis and Blastocystis spp. Given the high density of cats in the city, it is clearly important to assess the prevalence of protozoal infections among these animals as a first step towards achieving a better understanding of their role in the transmission of human infectious disease of feline origin eventually. Objectives: Since Doha has a high feral cat population, there is a need to understand the role of cats as vectors of human protozoal infections. Our preliminary data indicate that Blastocystis spp. and Toxoplasma gondii is highly prevalent among the residents of Doha. In this project, it was proposed to estimate the prevalence of gastrointestinal protozoa including Giardia intestinalis, Cryptosporedium parvum and Blastocystis hominis in the feral cat population in Doha. A total of 264 fecal samples will be collected from feral cat population from different geographical locations of Doha. Advanced technologies will be used including DNA extraction, RT-PCR and sequencing to provide an accurate assessment of the prevalence. Methodology Study area and Population: Fresh stool samples were collected from cats in different areas in Qatar. In this study, 37 areas were divided into two geographical regions: outside Doha and inside Doha based on occupation of people. Cats were trapped during the winter (November–April) and the summer (May–October) seasons of 2015. Traps were prepared with fish heads or canned cat food. Cats were retrieved from traps and assessed for sterilization status. Pregnant, lactating female cats and cats estimated to be less than 6 months old were immediately released. Cats older than 6 months were eligible for the study. In order to prevent any repetition and re-sampling of cats already and treated earlier, cat's ear will be tagged with a small metal tag. All project ethical approvals were obtained before the beginning of the project. Samples Collection Fresh stool samples were collected from sterilized cats during the period from February–September 2015 and stored at -20 °C by veterinary laboratory of stray cat control unit in Ministry of environment (department of animal resources). A total of 264 samples were processed in order to achieve the aim of this project. Samples were collected in sterile containers labeled with site, where the cat is found, gender and date of collection. The samples were kept and transported on ice and frozen directly after the sample collected. Fecal Examination In order to extract the DNA of the enteric pathogens samples were warmed at 4 °C and approximately 200 mg of the stool sample were used for examination. QIagen miniamp stool kit was used to extract DNA from the sample following manufacturer's instructions with minor modifications. Lyses buffer ASL was added and mixed with each stool sample. Since cat stool is hard to break, tissue rupture machine was used to ensure the homogenization of the sample and increase DNA recovery. This is followed by vortexing the samples and incubating them at 95 °C for 10 minutes to insure complete lysis. After lysis, samples were centrifuged for 10 minutes at 4500 rpm in order to separate and pellet the stool particles. After that, supernatant were placed in new microcentrifuge tubes. Using InhibitEx binding reagent DNA-degrading substances and PCR-inhibitors were separated and removed from the sample. The DNA InhibitEx matrix was centrifugated twice at 14,000 rpm for 3 minutes to pellet the stool and any impurities. 15 μL of proteinase K, 200 μL of the supernatant and 200 μL of the buffer AL were all added to new microcentrifuge and incubated at 70 °C for 10 minutes. Proteinase K is used to digest protein and remove contamination and inactivates nucleases which degrade the DNA during the purification process. However, in order to make proteinase K work high temperature is needed to denature proteins. Therefore, samples are incubated at 70 °C for 10 minutes. Supernatant part containing DNA was then transferred to a Qiagen Minispin column. Two different washing buffers with optimized pH and salt concentration were added to eliminate the digested proteins and any other impurities. Samples were centrifuged at 14,000 rpm before the addition of each buffer. Finally using AE buffer the DNA was eluted. DNA concentration was measured using Nanodrop (Thermo Fisher Scientific, USA). Primers and Probes Using primer designing software, the primer and probe sets used for detecting parasitic pathogens were designed based on data available in National Center for Biotechnology Information (NCBI) databases. Targeted genes were chosen based on published data and studies describing their sequences, uniqueness, and conservation. Real-time PCR Samples were analyzed by uniplex real-time PCR using Applied Biosystems Cycler 7500. Protocols were finalized after adjustment of the respective concentrations of primers, probes and the evaluation of several cycling protocols. A proposed protocol based on available literature was a starting point. Two different fluorescence reporter dyes were used in Real-time PCR. SYBR Green was used for Blastocystis hominis and TaqMan for other targeted parasites. For both fluorescence reporter dyes amplification reactions were performed in a total 20 μL volume in each well with 17.5 μL master mix and 2.5 μL DNA template. For each plate prepared positive controls consisted of internal controls provided by Hamad Medical Corporation (HMC). Both positive and negative controls were run for each sample. Sample PCR results were compared with both controls and analyzed using 7500 software v2.3. Results: A total of 264 of stray cat samples were trapped for examination of enteric parasite. The samples were classified according to their gender, area and season. Table (1) summarized the frequency of the cat population examined. Three protozoal parasites (Giardia intestinalis, Cryptosporidium parvum and Blastocystis hominis) were examined using real-time PCR. According to PCR results obtained previously, Giardia intestinalis was the only protozoa positively detected. Table (2) shows the prevalence of examined protozoa in cat samples. Figure 1 and Fig. 2 show the interaction between Giardia intestinalis infection and other independent variables (gender, season and area). Table 1. Number of stray cats examined by season, gender and study site from Qatar during 2015 Season Winter Summer Male Female Male Female Site N N N N Outside Doha 44 (16.67%) 39 (14.77%) 25 (9.47%) 23 (8.71%) Inside Doha 34 (12.88%) 20 (7.58%) 37 (14.01%) 42 (15.91%) Total 78 59 62 65 *N, number of samples; the number in brackets indicates the percentage of prevalence. Table 2. Number of subjects in each category and the prevalence (%) of the three species of protozoa by gender, season and area Number of subjects Giardia intestinalis Cryptosporidium parvum Blastocystis hominis Gender Male 140 5 0 0 Female 124 7.2 0 0 P 0.443 (NS) NS NS Season Winter 137 6.5 0 0 Summer 127 5.5 0 0 P 0.719 (NS) NS NS Area Outside Doha 131 5.34 0 0 Inside Doha 133 6.77 0 0 P 0.628 (NS) NS NS *NS: not significant **The highest prevalence in each category is in bold italics for emphasis. Benefits to Qatar This study will provide important data for the public healthcare, which they can exploit to determine the role feral cat might be playing in zoonotic diseases in Doha. The training in research methodologies will also foster the interest in research the undergraduate students have and therefore add to the pool of qualified researchers in Qatar.
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Enteric Protozoa Associated with Acute Diarrhea in Hospitalized Children in Qatar
Authors: Amal Ibrahim, Shaikha Al-Abduljabbar and Marawan Abou MadiIntroduction: Diarrhea is the passage of three or more watery stool in a period of 24 hours (WHO, 2013). Types of diarrhea include acute watery diarrhea, acute bloody diarrhea known as dysentery and persistent diarrhea (WHO, 2013). It is caused by an infection of different pathogens including bacteria, viruses and parasites through fecal–oral transmission (WHO, 2013). Moreover, it can also be caused by food intolerance to certain food substances and as a side effect of certain medications such as laxatives (Burton & Ludwig, 2015). Diarrhea occurrence is most frequently associated with conditions of poor environmental sanitation and hygiene, poverty, inadequate water supply and limited education (Nelson & Masters, 2014). Worldwide, acute diarrhea disease is considered as the second cause of mortality and morbidity in children according to the World Health Organization (WHO, 2013). In 2012, WHO reported 1.9 million diarrheal cases in children aged under the age of five accounting for 18% of all deaths. The clinical manifestations of diarrhea in pediatric patients include abdominal pain, nausea, vomiting and fever (WGO, 2012 & Maas et al., 2014). Diarrhea in children can lead to many consequences such as malnutrition, diminished growth and impaired cognitive development (WGO, 2012). Severe diarrhea can also result in life-threatening dehydration (Galvao et al., 2013). Thus it is important to replace the fluid and electrolytes by oral rehydration solution. Diarrhea is usually self-limiting. However, in cases of diarrhea persisting for longer than 1 week, broad-spectrum antimicrobial agents are administered to treat bacterial and parasitic infection (Koletzko & Osterrieder, 2009). Intestinal protozoa that are most commonly associated with diarrhea in children include Blastocyst, Dientamoeba fragilis, Giardia lamblia, Cryptosporidium species and Entamoeba species (Maas et al., 2014). Having updated information about the prevalence of these protozoan parasitic infections will aid in faster diagnosis and thus treatment. - Research question and objectives: Research Question: What are the most common protozoa and the risk factors for diarrhea in children under the age of 15 admitted to Hamad Medical Corporation (HMC). Objectives: To identify the prevalence of protozoa pathogen and the risk factors such as gender, age, season and geographical region associated with diarrhea in children. Materials and methods: Study subjects and sample collection: A total of 391 Diarrheal stool samples were collected from March-July 2015 in a sterile container from pediatrics patients (0- 15 years) admitted to HMC with diarrhea. The samples were transported on ice by Dr. Abu Madi's research group and frozen immediately at -70 °C. All required ethical approvals for the project were obtained from Medical Research Centre. - Stool examination: To recover the DNA of the enteric pathogens samples were thawed at +4 °C and 200 mg of the stool sample where weighed in a sterile 14 ml Falcon tube (BD Falcon). DNA was extracted using QIagen miniamp stool kit (Qiagen, Germany) following manufacturer's instructions with minor modifications. The extracted DNA samples were analyzed by uniplex real-time PCR using Applied Biosystems Cycler 7500. The protocol of the available literature has been used as a starting point. However, it was finalized by optimizing the concentrations of primer and probes and evaluating several cycles. The two different fluorescence reporters were used in which SYBR Green was used for Blastocyst, and TaqMan probe was used for D. fragilis, G. lamblia, Cryptosporidium and Entamoeba. For both reporters, Amplification reactions were performed in a 20 μL volume for each well with 17.5 master mix and and 2.5 DNA template. However, the mastermix of SYBR Green consist of 10 μL SYBR Green Mastermix reagent (Qiagen, Germany), 2.2 μL of primer mix, and 5 μL of PCR grade water H2O (Sigma, Germany). Whereas, Taqman reaction consists of 10 μL HotStar Taq Mastermix reagent (Qiagen, Germany), 1.3 μL of primer mix, 0.07 μL of probe and 6.2 of PCR grade water H2O (Sigma, Germany). The initial incubation step is carried out at 95 °C for 15 min to activate the HotStar Taq DNA polymerase, followed by a 40-cycle amplification program consisting of 15 s at 94 °C, 30s at 57 °C, 30s at 72 °C, and a final extension step at 72 °C for 30s. For each plate, internal positive controls were run consisted of positive samples brought from Hamad medical cooperation (HMC). Definition of variables: All Birth dates and collection dates were recorded and the ages of the subjects were categorized into five classes by years, 1.1-1.9, 2.0-4.9, 5.0-9.9 and 10.0-14.9. The collection dates were classified according to the season into summer (May-October) and winter (November-April). The subjects in this study came from 34 different countries. For the purpose of analysis, the subjects were grouped into four geographical groups. These were as follows: Qatar (N = 97), from three countries in the Arabian Peninsula (N = 16, Yemen, Saudi Arabia, Bahrain); from five countries in the Eastern Mediterranean (N = 41, Jordan, Lebanon, Syria, Iraq, Iran); from 7 countries in Asia (N = 131, India, Pakistan, Sri lanka, Bangladesh, Nepal, Mauritania, Philippines); from 7 countries in Africa (N = 86, Nigeria, Egypt, Tunisia, Sudan, Djibouti, Eritrea, Moroccan); from 10 countries in Europe (N = 20, Canada, Poland, UK, Greek, US, Holland, Spain, Italy, Venezuela, France) Statistical analysis: Prevalence data are shown with 95% confidence limits calculated using (https://www.mccallum-layton.co.uk). For determining the significance of different classes in each category, chi-square test was conducted using crosstabs descriptive statistics in IBM SPSS software. A p-value less than 0.05 is considered statistically significant. Results: Screening for gastrointestinal pathogens using multiplex RT-PCR A total of 391 pediatrics patients participated in this study during the period of March-July 2015. Out of the 391 diarrheal patients (173 females and 218 males), 41 (10.7%) were positive for at least one protozoa (Table 1 and 2). Blastocyst was detected most frequently, in 4.1% (16/391), followed by D. fragilis in 3.3% (13/391), Cryptosporidium in 2.8% (11/391), G. lamblia in 2.0 (8/391) and Entamoeba histolytica in 0.3% (1/391) (Table 1). Most of diarrhea samples in the study came from the age group of 0-1 year (119/391) followed by 2-4.9 years (108/391), 1.1-1.9 years (105/391), 5-9.9 years (45/391) and 10-14.9 years (14/391) (Table 2). However, protozoa infections were highest at the age group of 5-9.9 years with a prevalence of 21.1% (Table 2 and Fig. 1). Blastocyst and Cryptosporidium showed the same pattern of infections among the age groups with the highest prevalence at the age group 5-9.9 years (Table 2). Whereas, G. lamblia and D. fragilis showed the highest prevalence among the age group of 10-14.9 (Table 2). Females had a higher prevalence than males in infections with Blastocyst (6.4%), Cryptosporidium (4.0%) and G. lamblia (2.9%) (Table 2 and Fig. 2). Whereas, males had a higher prevalence than females in infections with D. fragilis (4.1) and Entamoeba histolytica (0.5%). A total of 34 countries categorized into 6 geoprahical regions were sampled in this study, but most of them were from Asia, Qatar & Africa regions (Table 2). However, the prevelance of protozoa infections was the highest among Europe (15%), followed by Qatar (14.1%), Arabian Peninsula (12.5%), Asia (9.9%), Africa (8.1%) and Eastern mediterean (7.3%). Most of the diarrheal samples were collected during the summer season from May to July (Table 2 and Fig. 3). However, protozoa infections had an overall higher prevalence during the winter season that is March and April (12.5%) (Table 2 and Fig. 4).- Association of protozoa infections with age, gender, geographical distribution and seasonAlthough, most of the variables (i.e. gender, age, season) have shown a high value in one of the categories, the difference was not statistically significant (p>0.05) (Table 2). The only significant variables were the age in combined, Blastocyst and Cryptosporidium infections and the gender in Blastocyst (p < 0.05) (Table 2). Blastocyst and Cryptosporidium infections affects the combined protozoa infections and have both the highest prevalence among the age group of 5-9.9 years with the prevalence of 15.6 and 11.1 respectively (Table 2). Blastocyst infections in Females have higher prevalence than male with a prevalence of 6.4% (Table 1). Conclusion: This study has demonstrated that protozoa parasitic infections are still a public health problem in pediatrics patients with Blastocyst, Dientamoeba fragilis and Cryptosporidium being the most common respectively. Therefore, protozoa parasitic infections should be tested for in children complaining from diarrhea. The study also highlights the use of molecular techniques in diagnosis of protozoa parasitic infections.
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