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Qatar Foundation Annual Research Conference Proceedings Volume 2016 Issue 1
- Conference date: 22-23 Mar 2016
- Location: Qatar National Convention Center (QNCC), Doha, Qatar
- Volume number: 2016
- Published: 21 March 2016
251 - 300 of 656 results
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Characterization and Antibacterial Efficacy of Mycosynthesized Silver Nanoparticles from the Desert Truffle Tirmania Nivea
Authors: Tawfik Muhammed Muhsin and Ahmad K. HachimDesert truffles are an obligate hypogenous ectomycorrhizal fungi in association with host plant roots Helianthemum sp. and are of socioeconomically important and naturally grown in the Middle East, North Africa, Southern Europe, Mediterranean countries including Arab Gulf countries. Truffles are edible and a rich source of protein and various chemical compounds and traditionally have been used as folk medicine in the Arabian countries. The last decade has witnessed an increase research interest focused on the biosynthesis of metal nanoparticles using fungi as natural sources and as a good tool in nanobiotechnology. Nevertheless, recently metal nanoparticles have been widely applied in multidisciplinary fields including medical and pharmaceutical applications. Among nanometals, silver nanoparticles are of great significance to be used in pharmaceutical aspect as antimicrobial agent. According to our knowledge little information so far is available regarding biosynthesis of silver nanoparticles by the truffles and to search for new antimicrobial alternatives, therefore, the objective of this study was to explore the desert truffle (Tirmania nivea) for its potentiality to biosynthesize silver nanoparticles (AgNPs) and to examine their efficacy against five strains of human pathogenic bacteria namely; Escherichia coli, Proteus mirabilis, Pseudomonas aeruginosa, Salmonella typhi and Staphylococcus aureus. Fruiting bodies (Ascocarps) of the truffle T. nivea were collected from the sandy desert of Iraq and brought to the laboratory, washed thoroughly with distilled water and dried at room temperature. Twenty gram of dried fruit bodies of truffle were grounded and dissolved in boiled water and filtered using Whatman filter paper No 1. For synthesis process of silver nanoparticles, 100 mL of truffle extract filtrate was treated with 1 mM of AgNO3 solution and kept for 24 hr at dark condition and synthesis of silver nanoparticles (AgNPs) was checked by visual observation of color changes from pale yellow to dark brown and was further confirmed by UV – Vis spectrum. Fungal filtrate without AgNO3 was maintained as control. The potentiality of silver nanoparticles was examined for their antibacterial efficiency using agar well diffusion method against the selected strains of pathogenic bacteria. Wells (5 mm diam) were made in Muller-Hinton agar (MHA) plates streaked with swabs of each bacterial strain. The wells were loaded with two concentrations (50 and 100 μl) of synthesized silver nanoparticles solutions, incubated at 37 °C for 24 hr and examined for the appearance of inhibition zones around the wells and their diameters were measured. Minimal inhibitory concentration (MIC) and minimal bactericidal concentration (MBC) assay was carried out using the micro dilution method with serial dilutions (100, 50, 25, 12, 6.5, 3.13, 1.56, 0.78, 0.39, 0.2, 0.1, 0.05, 0.025 μg/L) of the truffle extract filtrate against two strains of bacteria E. coli (ATCC 25922) and S. aureus (NCTC 6571). Disc diffusion method was used to assay the synergistic effect of synthesized AgNPs with commonly used antibiotic Gentamycin. Cytotoxicity of the truffle extract was examined against human blood. Characterization of the biosynthesized silver nanoparticles from truffle extract was carried out by using UV-Vis spectrophotometer analysis, Fourier transform infrared spectroscopy (FTIR) and scanning electron microscope (SEM). The results showed that the biosynthesized silver nanoparticles exhibited a high growth inhibition activity at 50 μl/ml concentration (12–25.5 mm inhibition zones dim) and at 100 μl/ml (14.5–28 mm inhibition zones diam) against the tested pathogenic bacterial strains. Among the tested bacteria, highest growth inhibition was noticed against P. aeruginosa (25.5 and 228 mm diam) at the two concentrations of AgNPs, respectively. However, a remarkable increase of bacterial growth inhibition zones (23–37 mm diam) was observed for a combination of silver nanoparticles and Gentamycin compared with Gentamycin alone (20–30 mm diam). MIC values were very low (0.312 and 0.0097 μg/ml) against the two tested bacterial strains E. coli and S. aureus, respectively. The truffle extract did not show any toxicity against human blood. UV-Vis spectrophotometer analysis revealed a peak at 420 nm indicating the biosynthesis of silver nanoparticles, FTIR analysis verified the detection of protein capping of biosynthesized AgNPs while SEM images showed that the synthesized silver nanoparticles are dispersed or aggregated and mostly spherical shape and their size ranging between 3–41 nm. It can be concluded that the biosynthesized silver nanoparticles by the desert truffle T. nivea are a promising for future medical and pharmaceutical applications as antibacterial agent and a further investigation to examine their efficacy in vivo is recommended.
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Association of Seminal Fluid -Immunologic Inflammatory Markers with Cotinine Concentration in Smoker Unexplained Infertile- Males
More LessObjective
To determine the causing association of the cigarettes smoking (measured by cotinine level in the seminal plasma) on the immunologic inflammatory markers (PMN-elastase, pro-inflammatory cytokines, and leukocytospermia) in seminal fluid (SF) of unexplained infertile men.
Materials and Methods
Tow hundred-thirty six unexplained infertile men, one hundred fourteen smoking and ninety six non-smokers were included in the study. They were being found without evident cause for infertility after initial workups. Other ninety fertile healthy non-smokers men were enrolled in the study as a control group. Seminal immunologic inflammatory markers (PMN-elastase, pro-inflammatory cytokines IL-8 and IL-6, and leukocytospermia) were measured in seminal plasma (SP) of all participants. Cotinine level in SP was measured as well, and correlated with inflammatory markers in all three hundred- twenty six specimens.
Results
The differences of seminal plasma inflammatory markers and cotinine level were significant between the three groups of the study, and significantly correlated with inflammatory markers.
Conclusion
The resulted substantial negative impact on sperm motility and morphology, and the correlation of cotinine level with immunologic inflammatory markers in SP, strongly indicate the presence of immunologic reaction in genital tract of the smokers. That may lead to silent genital tract inflammation. Which is, may be, the main cause for their unexplained infertility, and so, it would be sensible to advise infertile men to abstain from smoking cigarettes.
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3D Printing Assisted Prototyping of Anatomically Accurate Aortic Valve Alginate Scaffolds
More LessWithin the field of biomedicine, the scope of alginate application is broad and includes: wound healing, cell transplantation, delivery of bioactive agents such as chemical drugs and proteins, heat burns, acid reflux, and weight control applications. Recently the alginate based biomaterials for the treatment of myocardial infarction are entering into the advanced clinical trials stage. The non-thrombogenic nature of this polymer has made it an attractive candidate for cardiac applications, including scaffold fabrication for heart valve tissue engineering. The next pivotal property of alginates is their ability to form films, fibers, beads and virtually any shape in a variety of sizes. Moreover, alginates could form the gels in mild conditions, for example by adding calcium salt to an aqueous solution of alginate. The calcium ions displace the sodium from the alginate, and grasp the long alginate molecules together, resulting in a gel. This property is a base for obtaining the alginate scaffold with complex geometry of the aortic heart valve, in a few easy steps. These steps could be freely adjusted to yield the structure consenting precisely allocated viable cells. Alginate scaffold preparation was carried out by immersing the agarose mold saturated in CaCl2 solution (2% w/w). The calcium ions diffused form the mold and cross-linked alginate, subsequently the mold was removed. Obtained structure closely matched the mold geometry. The mold was made by casting the agarose into the 3d printed form. Moreover by extending the time of mold immersion into the sodium alginate solution, the thickness of scaffold and its composition can be controlled. The details of the process are discussed in this report. The drawback of alginate is that it yields relatively soft mechanically unstable structures. As reported elsewhere, that could improve if the scaffold will be saturated with viable proliferating cells. Alternatively the hydrogel can be reinforced by polymeric yarns.
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Physical Therapist's Perceptions of Cultural Influences on Stroke Rehabilitation in the State of Qatar: An Exploratory Analysis
Introduction
Culture has been defined as: “a tradition of knowledge and practice that is shared, albeit imperfectly, across the members of a society and across its generations” [Zou et al 2009]. It shapes people's experiences and their emotional reactions [Gard et al 2005], including their understandings of what it means to be healthy, the meanings of symptoms, attitudes towards disability and treatment, and coping strategies [Dean et al 2006; Gallaher et al 2001]. The study suggested here may offer new insights by exploring how culture shapes the experience of stroke care through the perceptions of Physical therapists working in the state of Qatar. Qatar is one of the wealthiest countries in the world. The culture reveals the modernising influences associated with oil exploration and technological advances whilst preserving collective traditions. The state provides extensive financial support for its own citizens including generous pensions and access to health care. However, in common with other Gulf states, the majority of the population are migrant or expatriate workers [Gallahar et al 2001], The Islamic faith plays a central role in government legislation and everyday life. This is a unique culture, as in Qatar, strong commitment to the Muslim religion, collective values, and generous financial support to purchase physical therapy services abroad, may result in an experience of care that is different from that reported in other areas of the world. Physiotherapists require not only cultural sensitivity but cultural competency, which is “the ability to honor, understand, and respect the beliefs, lifestyles, attitudes and behaviors demonstrated by diverse groups of people, and to diligently act on that understanding” [Omu et al 2012; Dean et al 2006]. Culturally competent care invites maximal cooperation with patients and their family members with the aim of promoting better outcomes [Niemeier et al 2007; Balcazar et al 2010].
Purpose
The aim of this study was to investigate the perceptions of Physical therapy professionals who treat stroke patients regarding cultural influences on the experience of stroke rehabilitation in the state of Qatar. Physical therapy professionals interviewed were from a variety of cultural backgrounds thus providing an opportunity to investigate how they perceived the influence of culture on stroke recovery and Physical therapy in Qatar.
Method
A descriptive qualitative exploratory research approach was used for the study. Semi-structured interviews were carried out with 23 Physical therapy professionals with current/recent stroke Physical therapy experience meeting the inclusion criteria from the department of Physical therapy, Rumailah hospital, Hamad Medical Corporation, Doha, Qatar, followed by thematic analysis of the verbatim transcripts.
Inclusion Criteria: Physical therapy professionals with current experience of working in stroke rehabilitation in the Department of Physical therapy, Hamad Medical Corporation, Doha, Qatar, those who are able and willing to participate in a 45-minute face-to-face interview which will be audio recorded, those who are having clinical experience of 5 years or more in the field of stroke rehabilitation and those who are having more than 2 year's experience working in stroke rehabilitation in the state of Qatar.
Exclusion crieteria: Other Health Care professionals and Physiotherapists poor in English language Data Collection: Primary data was collected through semi-structured face-to-face interviews. The interview consist of structured open ended questions. Trained researchers conducted all the informant interviews at the department. All interviews were conducted in English, and once the interview were completed, the researcher immediately transcribed it into an MS Word document. A second researcher who had not transcribed the interviews reviewed each of the audio recordings and subsequent transcriptions in order to ensure that the qualitative data is accurately transcribed and translated.
Procedure
The interviews were taken place in a quiet room at the Physiotherapy department, Rumailah Hospital. Interviews were conducted in English and were of 45 minutes duration which were audio recorded. The main questions/topic were as follows: In your experience, what are the Most significant challenges faced by stroke patients in the state of Qatar? How have you addressed psychological social issues during stroke rehabilitation? In your experience, does culture have any influence on the stroke experience and rehabilitation process in the state of Qatar (if so, why and how?)? What is your opinion regarding willingness of the patients for home exercise programs and their motivation level for doing so, does the culture is having any impact over this?
Data Analysis
Transcribed interview data were entered into a qualitative data analysis software package (NVivo 2.0) for systematic coding. A content analysis was performed to identify themes that emerged from the interviews. Content analysis, or qualitative description, has been reported as useful when the description of phenomena is desired (Pope et al. 2000). The identified themes were based on informants' collective perceptions and experiences relevant to the issues being explored in the study. Once transcripts were coded, reports weer generated which the research team analyzed according to the research objectives. The team met regularly to share impressions, develop main themes and discuss alternate interpretations.
Results
The Physical therapy professionals identified several features of the Qatari culture that they believed affected the experiences of stroke patients. These were religious views, family participation, lack of awareness regarding expected outcomes and use of Physical therapy, inadequate education and public information about stroke, prevailing negative attitudes toward stroke, depression and loss of hope, social stigma and the public invisibility of disabled people, difficulties in identifying meaningful goals for Physical therapy, lack of patient and family centeredness and an reception of reliance linked with the extensive help of maids or helpers in Qatari homes. Community reintegration of the stroke victims need to be addressed in a vider perspective Lack of ‘self help groups’ with expert back up is not yet established to satisfy the demand. Lack of recreational and group activity scenarios for the stroke survivors in association with community groups Perodic councelling and antidepression measues at the social level has to be addressed. The key features identified for non-Qatari populations are insecurity, financial burden, social and emotional isolation. The anxiety of the future, lack of family support, fear of unemployment and repatriation worsens the scenario for those staying in group accommodations. Majority of the non-Qatari population wants a complete recovery and participates heavily in Physical therapy practice in order to resume back to their jobs as early as possible.
Conclusion
To offer culturally delicate care, these issues should be taken into account during the provision of Physical therapy or rehabilitation for stroke survivors in a culturally compatable way. There should be more emphasis on ongoing education, community out reach programs and environmental modifications for an ulitilame rehabilitation of such patients Insinuations for Rehabilitation Physical therapy professionals need to mold therapy to the patient's and family's model of care, reflecting their cultural background. Physical therapy professional can suggest, develop and actively participate stroke awareness sessions and community out reach programs, deliverable at home and community levels addressing the nation. Physical therapy professionals may need to be attentive that the presence of house maids and privately hired nursing staff may decrease the motivation of people to engage in Physical therapy after stroke. A care giver education and training should be considered as an important adjunct to the stroke physical therapy care. Cultural variations in degree of family involvement, prevailing negative attitudes towards stroke, and acceptance of dependency should be taken into consideration by stroke Physical therapy professionals. Physical therapy professionals should participate actively in the community based rehabilitation of stroke survivors. As patients spent more time with Physical Therapy professionals than any other health care professionals, physical therapists can act as counselors and/or motivators for the survivors. Physical therapist can be deployed as captains of self help groups which can be designed in the national level. There should be community out reach programs for the stroke survivors where Physical therapy potentials can be tapped further Physical therapist can facilitate the ongoing rehabilitation process of non Qatari expatriate survivors with the help of concerned employers and embassies once they are discharged from the active care, if it is acceptable.
Limitation
The main limitation was the sample size and difference in the percentage of national and expatriate Physical therapists interviewed, which any way will have a strong influence on the result. This was a reporting own perceptions about the stroke physical therapy care and familial and cultural back ground of the patients which will be different from the patient perspectives. Conclusions Physical Therapy professionals need to deliver therapy which is culturally molded and acceptable to the patient, family and the community. Care giver training need special emphasize in Qatari culture. Qatari and non-Qatari patients are facing dissimilar psychosocial issues which needs to be analyzed and managed as different topics. Cultural sensitivity entails Physical therapy professionals to engross with the family of the stroke survivors and to escalate their confidence and hue their perception own their disability, as well as offering more education about the principles behind therapeutic strategies.
Declaration of interest
The authors report no conflicts of interest.
References
Zou X, Tam KP, Morris MW, Lee SL, Lau IY, Chiu CY. Culture as common sense: Perceived consensus versus personal beliefs as mechanisms of cultural influence. J Pers Soc Psychol 2009;97:579–597.
Gard G, Cavlak U, Sunden B, Ozdincler A. Life-views and ethical viewpoints among Physical therapy students in Sweden and Turkey: A comparative study. Advances in Physical therapy
Dean E, Mahomed S, Maulana A. Cultural considerations for Middle Eastern cultures. In: Lattanzi J, Purnell L, (eds.). Developing cultural competence in physical therapy practice. Philadelphia, PA: F.A. Davis Company; 2006. pp. 260–275.
Gallaher C, Hough S. Ethnicity and age issues: Attitudes affecting rehabilitation of individuals with spinal cord injury. Rehabilitation Psychology 2001;46:312–321.
Omu, Onutobor, and Frances Reynolds. “Health professionals' perceptions of cultural influences on stroke experiences and rehabilitation in Kuwait.”Disability and rehabilitation 34.2 (2012): 119–127
Pope, C., S. Ziebland and N. Mays. 2000. “Qualitative Research in Health Care: Analyzing Qualitative Data.” British Medical Journal 320: 114–6.
Niemeier J, Carlos Arango-Lasprilla J. Toward improved rehabilitation services for ethnically diverse survivors of traumatic brain injury. J Head Trauma Rehabil 2007;22:75–84.
Balcazar F, Suarez-Balcazar Y, Taylor-Ritzler T, Keys, C. Race, culture, and disability: Rehabilitation science and practice. Boston, MA, US: Jones and Bartlett; 2010.
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Lipidomics for the Prediction of the Unstable Coronary Plaque
Authors: Shana Sunny Jacob, Nasser Rizk, Rajvir Singh, Jassim Al Suwaidi and Magdi YacoubPlaques that build up in the lining of the coronary arteries are made up of lipids, inflammatory cells, smooth muscle cells and connective tissue. Thormbosis of a not necessarily occlusive but unstable plaque most often causes episodes of unstable angina and myocardial infarction (MI). Preventing this sudden and adverse event seems to be the only effective startegy to reduce mortality and morbidity of coronary artery disease (CAD). Countries in the Middle East bear a heavy burden from cardiovascular disease. The population of Qatar is particularly prone to CAD with patients presenting with MI at a young age. The prevalence of CAD is in turn promoted by risk factors such as smoking, hypertension, dyslipidemia, diabetes and sedentary lifestyles. Metabolomics approaches to the identification of disease biomarkers rely principally on the comparitive analysis of metabolite expression in normal and disease patients, animal models or cell cultures to identify aberrantly expressed proteins or concentration changes in metabolites that may represent new biomarkers or elucidate a disease mechanism. Lipidomics is the global identification and quantification of a diverse range of lipids in biological systems and is a subset field in metabolomics. The eukaryotic lipidome might compise of 10,000 to 100,000 individual species of lipids originating from a few hundred lipid classes. These lipids are distributed as part of biological membranes, energy storage substances and sometimes function as signal transducers. Altered lipid metabolism and dyslipidemia in the context of inflammation and oxidative stress are driving forces in the transition from stable to unstable plaques. Therefore, a characteristic lipid signature within unstable human plaques and also in the circulating blood plasma could be a predictor of an oncoming cardiac event. This ongoing study was conducted on samples volunteered by acute coronary syndrome (ACS) patients at the Heart Hospital, Doha, Qatar. ACS is a term that describes any condition brought on by the sudden reduced blood flow to the heart due to thrombosis in the coronary arteries and encompasses unstable angina (UA) and both ST-segment elevation (STEMI) and non ST-segment elevation myocardial infarction (NSTEMI). A complete occlusive thrombi leads to extensive myocardial cell death and typically produces an elevated ST-segment in the electrocardiogram. In UA, ischemia occurs unpredictably and suddenly and is caused by the temporary formation of blood clots within the coronary arteries. Unstable angina often occurs before a MI. Distinguished from ACS are patients with stable angina (SA) who develop symptoms due to exertional ischemia. The aim of this study was to profile the global individual lipid levels of subjects in Qatar with unstable CAD, comparing global lipid levels between patients with unstable angina and ST-elevated myocardial infarction. We chose to discover the lipid biomarkers using a workflow utilizing tandem mass spectrometry with on-line ultra-high pressure liquid chromatography (UPLC-MS/MS). Mass spectrometry is a powerful technique that can be used to identify unknown compounds, to quantify known materials and to elucidate the structure and chemical properties of molecules. Recent advances in the accuracy and speed to the technology allow data acquisition for the global analysis of proteins, lipids and metabolites from complex samples such as blood plasma or serum. As we were trying to discover a new lipid biomarker, a technique that would maximise the number of compounds detected, identified and quantified them was favourable. Once the samples were analysed by tandem mass spectrometry, the ion intensity data from each sample was aligned with each other by retention time and lipid mass, normalised and deconvoluted. The signals were then attributed to a particular lipid species by utilising a lipid database and comparing the mass of the detected lipid and piecing together information gained from the fragment data of that lipid from the orbitrap. Statistical analyses of the signals for each individual lipid were then conducted by comparing within group percent coefficient of variation (?CV), fold change and analysis of variance (ANOVA) tests between sample groups and q-value and power calculations. Principal component analysis (PCA) was conducted in order to differentiate the samples under supervised conditions into STEMI and UA groups. A total of 1,663 and 874 lipid compounds were identified in positive and negative modes of mass spectrometry respectively. Of these, 7 compounds showed a significant change (ANOVA p-value < or equal to 0.001) between the STEMI and UA groups. The identities of these compounds are yet to be elucidated. Of the compounds with a significant change between sample groups of ANOVA p-value < or equal to 0.005, five compounds were able to be identified by mass and spectral matching with a lipid database. The PCA scores plot, which distributes samples in multi-dimensional space according to the variance seen in each principal component, showed very low evidence of discrimination between the sample groups with sample scores clustered in a single mixed pattern. This analysis suggests that the lipid abundance changes between the sample groups were difficult to find. This was most likely due to a combination of two reasons: (1) large within-group biological variance that needs to be overcome to detect the between-group variances and (2) the low differences in lipid concentrations between the sample groups. With a greater number of samples, this results is expected to change as the power of the study would increase. Successful results obtained from this study will aid healthcare professional in intervening with appropriate treatment in persons showing no symptoms but are under threat of developing angina or acute MI. The discovery of a lipid biomarker could assist healthcare professionals in prevention of an acute cardiac event thereby saving lives.
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Altered Myofilament Structure and Function in Dogs with Duchenne Muscular Dystrophy Cardiomyopathy
Aims
Duchenne Muscular Dystrophy (DMD) is a disease that mainly affects young mans. It is characterized by striated muscle disorder. DMD is associated with depressed heart pump function resulting from a down regulation of the left ventricular (LV) contractility. However, its effects on myofilament structure and function are poorly understood. A healthy heart is characterized by gradient of contractility spanning throughout its left ventricular (LV) wall thickness. The inner layer of the wall is known as the sub-endocardium layer (ENDO) and the outer layer is known as the sub-epicardium (EPI). The gradient of contractility is established due to the significantly high contractility of the ENDO compared to EPI. During heart failure, the contractile heterogeneity between ENDO and EPI is suppressed eliminating, thus, the gradient of contractility. Interestingly, this effect of pathology is mainly due to ENDO contractile dysfunction. These observations have maid ENDO layer to be an ideal target for heart failure treatment. Golden Retriever Muscular Dystrophy (GRMD) is a dog model of DMD observed in human. In the present study, we employed this animal model to evaluate the impact of DMD on the myofilament structure-function relationship. Accordingly, we isolated cardiac multicellular and single cells samples on which we evaluated myofilament lattice spacing, myofilament calcium sensitivity and contraction kinetics. It is to note that the force developed by cardiac single cell and multicellular preparations depends on their stretch status. For instance, at long length tension developed by an isolated single cardiac cell is higher than when it is maintained at slack length. During heart failure, this stretch effect on the contractility is significantly reduced particularly in the ENDO layer. Sarcomere length (SL) is the unit commonly used by investigators to evaluate muscle length. Accordingly, in the present study, we conducted our experiment on samples isolated from EPI and ENDO layers of GRMD animals at both short and long SL.
Methods and results
To evaluate the effect of muscular dystrophy on the myofilament structure, we have employed synchrotron x-rays diffraction approach to measure myofilament lattice spacing at various sarcomere lengths (SL) on permeabilized LV myocardium. Moreover, to evaluate transmural contractile heterogeneity in normal dog heart, myocardium samples were isolated from both EPI and ENDO left ventricular layers. Here we tested whether the lattice spacing responds differently to stretch in ENDO and EPI tissues. We obtained clear X-ray patterns from our tissue sample showing sharp equatorial reflections. As expected, spacing between thin and thick filament was reduced upon stretching. We found that d1,0 decreased linearly with SL over the SL range from 2.1 to 2.5 μm in ENDO and EPI, and that the slope of the SL–d1,0 relationship was similar in both myocardial tissue layers (Fig. 1). Despite the lack of regional lattice spacing heterogeneity, we investigated sarcomere function in isolated myocytes from the same hearts to measure myofilament calcium sensitivity. Force-pCa relationship was fitted with a modified Hill equation and EC50 ([Ca2+] generating 50% of maximal active force) was estimated. Both ENDO and EPI cardiomyocytes showed a decreased EC50 at long SL indicating increased calcium sensitivity (Fig. 2, A). To estimate myofilament length dependent activation (LDA), we computed the difference between [Ca2+] generating half of the maximal force at short (1.9 mm) and long (2.3 mm) sarcomere length (DEC50). This parameter is commonly employed to evaluate LDA. We found LDA to be higher in ENDO cardiomyocytes (Fig. 2, B) as indexed by a significantly higher DEC50 in this region. These results indicate that in dog myocardium, the higher length sensitivity of activation in the inner layer of the ventricle cannot be explained by differential interfilament lattice spacing. We evaluated myofilament Ca2+ sensitivity and LDA on permeabilized cardiomyocytes isolated from both CTRL and GRMD dogs. Myofilament calcium sensitivity was higher at short SL in ENDO GRMD myocytes compared with control dogs as indexed by a significant lower EC50 (Fig. 4, A). Differences of myofilament calcium sensitivity between CTRL and GRMD ENDO myocytes disappeared following stretch. As a result, LDA indexed by the DEC50 was lower in GRMD myocytes (Fig. 4, B). We did not find any significant difference in EPI cardiomyocytes contractile parameters. To determine whether the changes in myofilament calcium sensitivity in myocytes from failing hearts were associated with myofilament structure alteration, we performed X-ray diffraction experiments on permeabilized normal and GRMD dog ENDO myocardium at short (∼1.9 mm) and long (∼2.3 mm) sarcomere length (Fig. 4). Next, we used small -angle X-ray diffraction to assess changes in myofilament lattice structure with increasing sarcomere length in GRMD and normal dog myocardium to see if structural changes correlate with LDA. Figure 4 Panel A shows a typical CCD image of X-ray diffraction pattern. Pixel intensity was plotted and the 1,0 equatorial reflection estimated (Fig. 3, B). As observed with the first experiments (Fig. 1), the lattice spacing is reduced with stretch on CTRL myocardium (Fig. 3, C). Interestingly, the interfilament spacing was significantly higher on GRMD ENDO myocardium compared with the normal myocardium. Stretch reduced the interfilament spacing of ENDO GRMD myocardium that matches the spacing obtained on CTRL dog myocardium. The myopathy induced a myofilament lattice expansion that exceeded the physiological range. In order to test that the expansion in interfilament spacing was not due to the lack of dystrophin we also analyzed the myocardium dissected from the sub-epicardium. The higher lattice spacing in ENDO GRMD myocardium may impact myofilament calcium sensitivity and/or cross-bridge cycling kinetics. At the permeabilized single cardiomyocytes level, kinetic of tension redevelopment (ktr) was measured by mechanically disrupting force-generating cross-bridges at either sub-maximal activating solution ([Ca2+] = 1.3 μM) or at maximal calcium activation ([Ca2+] = 32 μM). Cross-bridge disruption was induced by rapid release/restretch protocol. Cardiomyocytes were perfused with activating solution, when developed force reached steady state, a rapid (2 ms) release/restretch of 20% original cell length was applied. The cell was shortly kept (20 ms) at the unload shortening prior to 100% restretch. Following the release step, force dropped to zero indicating a complete cross-bridge detachment. The restretch step, in the other hand, was characterized by an apparent monoexponential raise of force up to initial maximal force with rate constant ktr. This experimental protocol has been applied on both CTRL and GRMD permeabilized ENDO cardiomyocytes (Fig. 5). Ktr is usually used to estimate the rate of transition from weakly bound (non-force-generating) to strongly bound (force-generating) cross-bridges. Therefore, an estimation of cross-bridge cycling performance can be obtained. In ENDO cardiomyocytes from healthy dogs, ktr obtained at sub-maximal calcium activation tended to increase after stretch but it did not reach significance (Fig. 5, B). Interestingly, ktr was significantly accelerated in ENDO GRMD myocytes only at short SL (Fig. 5, A and B). Collectively, our results suggest that in myocytes from GRMD dog with heart failure there are structural changes that affect the myofilament contractile properties.
Conclusions
At short SL myopathy induces an excessive expansion of the myofilament lattice spacing that may affect myosin heads orientation. This myofilament restructuration improves weak to strong cross-bridge transition as indicated by ktr acceleration. The positive cooperative activation of thin filament through strongly bound cross-bridges improves myofilament Ca2+ sensitivity and overall cardiomyocyte active tension. Additional experiment need to be conducted to better understand the interconnection between myofilament lattice spacing and performance in myopathy induced heart failure of large animal model.
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Dimensional Shapes, Similar in the Shape and Architecture to the cup-like Structure of a Normal Human Valve, Produced using PET Spatial Knitted Fabric
More LessRecently multiple examples of applications of knitted fabrics in HVTE were reported. One of the most frequently citrated strategy was developed in Mela's group. In that case, the fibrin constituting the leaflets of valves is enforced using a warp-knitted tubular mesh, made out of polyethylene terephthalate (PET). In all reports, the authors evaluated biocompatibility of the construct by encapsulating the cells in the fibrin gel constituting the leaflets and quantifying the secreted ECM proteins. Other authors reported that in vivo implantation with fibrin-based tissue-engineered heart valves revealed an absence of calcification, thrombus formation, aneurysm development or stenosis. After 90 days of implantation, it was also observed that a monolayer of endothelial cells was formed, which exhibits the promise of fibrin scaffolds for HVTE. This approach is potentially adaptable for the intelligent scaffold development, which will require replacing non-degradable yarns with bioresorbable yarns. This would be necessary since in the smart solutions; the synthetic yarns need to be finally absorbed and replaced by extra cellular matrix proteins, deposited by in situ recruited cells. PET is not a bioresorbable material, thus alternative strategies need to be proposed to enable growth of valve tissue within the patient. The solutions proposed by Mela and colleagues are promising and encourageable. Inspired by these reports, we fabricated valve leaflets using spatial PET knitted fabric. The construct obtained very closely matched the histological structure of leaflets with 3 layer architecture. This is already important accomplishment towards scaffold closely matching architecture of native valves. The future steps will involve replacing PET with polycaprolactone yarns to enhance construct biocompatibility.
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The Molecular Basis of Alpha-Thalassemia in the Qatari Pediatric Population
Authors: Madeeha Kamal, Ramin Badii, Aliaa Amer, Shaza Abu Sirriya and Marina KleanthousBackground
Anemia is the most common hematologic abnormality that a pediatrician encounters in clinical practice. Alpha-Thalassemia (a-thal) is widely reported in the Arabian Peninsula as one of the main causes ofasymptomatic microcytic hypochromic red blood cells with or without anemia in the pediatric population. The most common cause of anemia is either iron deficiency or thalassemia trait. Majority of the carriers for beta-thalassemia and some forms of alpha-thalassemia are clinically asymptomatic and although their hematologic phenotypes (i.e. microcytic hypochromic red blood cells) with or without anemia are predictive markers, they are not specific and overlap with conditions such as iron deficiency. Precise diagnosis of alpha-thalassemia is particularly important in the Gulf region where certain forms of alpha-thalassemia (especially non-deletional) are found, resulting in more severe phenotypes. Geographical prevalence's in the region are also variable as seen in a recent large survey of cord blood from Oman at the Sultan Qaboos University Hospital revealing a minimal frequency of approximately 50% of alpha-thalassemia of which hematologically relevant form is expected to represent a significant proportion. Unlike beta-thalassemia for which differential diagnosis can be made by measuring HbA2 levels, it is difficult to distinguish between alpha-thalassemia and iron deficiency, and DNA based diagnosis is essential. Furthermore, DNA diagnostics can provide insight into the commonly observed discrepancies between phenotypes and genotypes, especially in cases of sickle cell disease and beta-thalassemia, where alphathalassemia is known to act as a genetic modifier. To date neither diagnosis of alpha-thalassemia (trait) nor its molecular spectrum had been accurately performed and described in Qatar. This is despite the fact that in Qatar, both beta and alpha-thalassemias (Hb Barts at birth) are not uncommon and nutritional anemia can rarely be expected as cause of such microcytic hypochromic red cells because of therelatively high socioeconomic status of the country. The only published work on alpha-thalassemia in Qatar is a hospital based study in which 1,702 Qatari nationals (905 females, 797 males) were investigated for hemoglobinopathies and of which 8.05% of the patients were suspected to be alpha-thalassemia trait. Preliminary hematology results from the first year of the national premarital program in Qatar further support these results (unpublished data). Our study is the first of its kind in attempting to characterize the molecular spectrum of alpha-thalassemia in Qatar. For this purpose the study population were selected from Qatari school children. According to Qatar's national preschool assessmentprogram, all students are required to undergo routine physical checkup and blood analysis for anemia, prior to the start of their school. Results are then forwarded to the school where the school nurse will review and refer students with low Hb leveland/or low normal Hb along with low MCV values, to the Consultant Pediatrician at Qatar's Pediatric Clinic at the School Objectives:
● Determine the mutation spectrum of alpha-thalassemia in Qatari school children population.
● Making a preliminary assessment of the prevalence of inherited alpha-thalassemia in Qatari school children with hypochromic microcytic red cell with or without anemia.
● Establish molecular diagnostic protocols for diagnosis of alpha-thalassemia in Qatar, more specifically in HMC.
● Improving the healthcare management (treatment options) of individuals with hypochromic microcytic red cell with or without anemia.
● Depending upon the spectrum obtained, making recommendations regarding expansion of the current premarital and genetic counseling services in Hamad Medical Corporation.
Methodology
This was a prospective study that began in May 2012 for duration of two years and extended for an extra year searching for further mutations and analysis. Random samples were selected through the pre-school health assessment program at Qatari public schools. It is mandatory for all students to submit a full blood work-up on admission, to be held on record at their respective schools. The designated health professionals at these schools evaluate the complete blood count (CBC), and identify students with hypochromic mycrocytic red cells with or without anemia. Those with definite clinical and laboratory determination of iron-deficiency anemia are treated first for nutritional anemia. For this study, children that continued to have microcytosis (low MCV) were randomly selected. Hemoglobin (Hb) electrophoresis was performed to rule out other causes of microcytic anemia, including beta-thal. The group was ultimately narrowed down to a pool of 127 individuals with findings highly suggestive of alpha-thal, although not yet molecularly diagnosed. The samples were screened for the presence of the –alpha3.7 deletion and the alpha–5 nt, alphapoly A1 (alphaT-Saudi) and alphapolyA2 nondeletional mutations. A second group of 110 children who attended the pediatric clinic for reasons other than anemia were randomly selected. and included in this study in order to determine the alleles and genotype frequencies of the –alpha3.7 deletion in the Qatari population.
Results
Among the samples of 127 individuals, a total of 50 samples exhibited the 3.7 kb deletion; 38 (30.0%) subjects were heterozygous for the mutation, while 12 (9.4%) subjects were homozygous for the mutation. Only one subject (0.8%) was found to be heterozygous for the alpha–5 nt mutation. Three samples were positive for the alphapolyA1 (alphaT-Saudi) mutation, two (1.6%) of the three were heterozygotes and one was a compound heterozygote with the –alpha3.7 deletion. None of the subjects carried the apolyA2 mutation. Fifteen (11.8%) subjectswith mild indices who tested negative for the presence of the–alpha3.7 deletion were considered normal for alpha-thal, while 58 (45.6%) subjects were negative for all four alpha-thal mutations. These subjects were characterized by severe hypochromic microcytic anemia necessitating the extension of the screening for other alpha-thal mutations by sequencing both alpha-globingenes for nondeletional mutations or by multiplex ligand dependent probe amplification (MLPA) (P140 HBA kit; MRC-Holland, Amsterdam, The Netherlands) (http://www.mlpa.com) analysis of the a locus for large deletions. The 110 individuals who constituted the random sample were subsequently screened for the presence of the –alpha3.7deletion that was the most common alpha-thal mutation in the 127 individuals with hypochromic microcytic anemia. Twenty nine (26.4%) out of 110 samples were found to be heterozygous, while five (4.5%) samples were homozygous for the–alpha3.7 deletion. The –alpha3.7 allele frequency in the Qatari population was calculated from these data as 17.7%. Using this frequency, the expected carrier frequencies in the Qatari population were calculated as 3.13% for homozygotes and 29.13% for heterozygotes.
Conclusion
were found positive for one of the three mutations, the ? α3.7 deletion, αpolyA1 and the α?5 nt mutations. In this pool of individuals, the ? α3.7 deletion was the most common with 9.4% homozygotes, 30.0% heterozygotes and an allele frequency of 19.7%. 57.2% of children failed to exhibit any mutation despite their clinical presentations highly suggest alpha-thalassemia. This suggests the possibility of other existing mutations in Qatari populations that are yet to be elicited. The mutations found in this study are ground breaking for the Qatari medical community, and have provided a solid explanation for patients with findings suggestive of alpha-thal. This study has paved the way for diagnostic testing for alpha-thal in the Qatari pediatric population. This data will be shared in order to establish an algorithm for prevention, treatment and counseling related to alpha-thal in the Qatari pediatric population. This study has provided important clinical diagnostic insight for physicians treating patients suspected of alpha-thalassemia in Qatari pediatric population and also molecular diagnostic tools for laboratories to test such patients.
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Diagnostic Delay of Tuberculosis in Qatar: Results of an Exploratory Study
Background
According to the World Health Organization Report on Tuberculosis in 2013, it is estimated that 9 million people developed tuberculosis and 1.5 died of the disease. In Qatar, the incidence of tuberculosis is the highest in the Gulf countries but this mainly depends on migrant laborers from countries with high incidence, especially Nepal, India, and the Philippines. It is important to consider that only India contributes with the 25% of the global burden of tuberculosis. Among the strategies for the prevention and control of tuberculosis are included measures to promote the early diagnosis and the compliance with treatment. The delay in the diagnosis has a critical role in the control of tuberculosis and it constitutes a threat for the community and it worsens the prognosis for the patient's improvement in the clinical status. In a literature review of 52 studies, Sreeramareddy CT et al reported that (median or mean) total delay, patient delay, healthcare system delay for diagnosis of tuberculosis were ranging from 25 to 185 days, 4.9 to 16.2 days and 2 to 8.9 days respectively. The overall average patient delay was similar to health system delay (31.03 versus 27.2 days). According to a multinational study about diagnostic delay carried out in the Eastern Mediterranean Region (EMR) in 2003–2004 the mean duration of delay between the onsets of symptoms until treatment with anti-tuberculosis drugs ranged from one month and a half to 4 months in the different countries. The mean delay was 46 days in Iraq, 57 in Egypt, 59.2 in Yemen, 79.5 in Somalia, 80.4 in the Syrian Arab Republic, 100 in Pakistan, and 127 in the Islamic Republic of Iran. This report comments that the infection control programs are able to detect an average of one third of smear-positive tuberculosis cases, while the rest continue to transmit infection in the community until treated, whether adequate or inadequate by other health sectors. Recently published papers report total diagnosis delay of 60 days (Porto Alegre and Yemen, 2013), and 36 days (Guimaraes, 2015), patient delay of 15 days (Brazil, 2013 - Porto Alegre, 2013) and system delay of 15 days (Croatia, 2013) and 18 days (Porto Alegre, 2013). No previous reports have been published about the topic in Qatar. Based on the previous information and on the national goal for prevention and control of communicable diseases we considered necessary to conduct an epidemiological research to describe the diagnostic delay in tuberculosis, as an initial step for a population-based study.
Objective
– To identify the diagnostic delay in patients with tuberculosis and to describe the patient and healthcare system components.
– To test the method of collection of information for the design of a population-based study.
Methods
An exploratory study was carried out in 49 newly diagnosed tuberculosis patients admitted to a hospital facility during the period of May-October, 2015 Criteria for inclusion:
– Patient who accepts to answer the questions during a regular clinical interview.
– Patient with a clinical status who allows the interview, regardless of the type of tuberculosis (pulmonary or extra pulmonary) Criteria for exclusion
– Unstable clinical status that interferes with a proper communication
– Language barrier that could not be overcome due to unavailability of interpreter for any specific language.
Procedure During the admission period, and during the regular clinical evaluation, the patients answered the study questions. The interview was conducted by a nurse, using an interpreter if considered necessary. It was collected information about the first time the patient arrived in Qatar and the date of onset of symptoms related with tuberculosis. If the patient visited an outpatient or emergency department of another healthcare facility during the symptomatic period and before the admission, it was defined the date and the type of facility (primary level facility, hospital facility) and if the treatment recommended included antibiotics. The date of diagnosis was considered to be the date of the collection of the confirmatory laboratory test (acid fast bacilli or GeneXpert PCR positive for mycobacterium tuberculosis complex in clinical samples).
Definitions
– Patient delay was considered as the time between symptoms onset and first contact with the healthcare system, regardless the category or level of care provided by the facility (primary healthcare facility, hospital).
– System delay was considered as the time between the first contact with the healthcare system and the diagnosis.
Analysis
Data were entered in JMP 10.0 (SAS Institute, http://www.jmp.com). Descriptive statistical methods were used. Median and percentile distribution was calculated for patient and healthcare system delay, and boxplot graph was obtained. The interquartile range [IQR] was calculated (Q3 – Q1).
Results
The patients have lived in Qatar a mean time of 5.5 years, with a maximum of 32 years. All patients were confirmed with pulmonary or pleural tuberculosis by means of a smear positive for acid fast bacilli, PCR positive for mycobacterium tuberculosis complex in clinical samples (sputum, pleural fluid, biopsy samples). The median total delay was 30 days (IQR 23.5 days, maximum 365 days), the patient delay was 21 days (IQR 22 days, maximum 362 days), and the system delay was 3 days (IQR 8 days, maximum 60 days). 26 patients out of 42 who visited another facility before admission (61.9%) were attended in a primary healthcare facility and 16 patients (38.1%) in a hospital facility. The 92% of these patients received antibiotic treatment for the management of the respiratory symptoms and were discharged from these ambulatory contacts. After that, due to no improvement of their clinical status they were admitted to hospital and the diagnosis of tuberculosis was confirmed. The above-mentioned results highlight the contribution of the patient component in the diagnosis delay in tuberculosis, which constitutes a significant risk for community transmission. Consequently, this finding should guide the actions for the prevention and control of tuberculosis. It is important to stand out the strengths of the tuberculosis program in Qatar, including the availability of the latest technology for its diagnosis (Gene Xpert PCR, Quantiferon TB Gold, PCR for rifampicin resistance), which is performed in a central laboratory at a national level, and a devoted Tuberculosis clinic for diagnosis and follow up with devoted staff with expertise on this field. In addition, the national law supports the free of charge healthcare services for tuberculosis patients, including the admission in hospital, anti tuberculosis treatment and follow-up.
Conclusion
Our findings provide insights about the delay of tuberculosis diagnosis and the need to identify strategies for its reduction, especially the patient component.
Recommendations
To conduct a population-based or cohort study to identify the risk factors and determinants for delay in the diagnosis of tuberculosis, including detailed information about the health-seeking behavior of patients with suspected tuberculosis.
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Physical Therapist's Adherence to a Structured Evidence Based Practice Guideline Improves Practice Behavior and Quality of Care; Result of an Exploratory Analysis in a Tertiary Level Hospital in Qatar
Background
Development of clinical guidelines in health services is generally considered important for improving and managing the care process (Grimshaw et al., 1995a, Grimshaw et al., 1995b, Grol and Grimshaw 2003, Grol et al., 2004). Clinical guidelines are systematically developed statements designed to help practitioners and patients to make decisions about appropriate health care (Field and Lohr 1992). Higher quality of care and improved cost effectiveness are important goals in guideline development, optimally resulting in improved health (Woolf et al., 1999). Moreover, the process of guideline development addresses the need to decrease variability in professional practice, and practitioners' desire to legitimize their profession in the eyes of external stakeholders (Grimshaw et al., 1995a, Grimshaw et al., 1995b, Grimshaw and Hutchinson 1995, Grol and Grimshaw 2003, Grol et al., 2004). The concept of evidence-based practice, supported by clinical guidelines, is a common aspect of health care today. No reviews have been published which specifically review the effect of strategies to increase the implementation of Physical therapy guidelines. In a study by Rebbeck et al., (2007), the effect of implementation of spinal pain guidelines was reviewed. Although 14 trials were included in the review, only three included Physical therapy interventions Currently there is no formal training or education sessions to unify the Physical therapy practice in the department, which in turn resulting in greater practice variations and results. Grater variability in professional practice directly influences the outcome of patient care. To counteract this, Physical therapy unit, Rumailah hospital, Qatar has developed Physical therapy specific clinical practice guideline called ‘PAAS Guideline’ (Physical Therapy After Acute Stroke) to enhance the effectiveness and efficiency of post acute stroke Physical therapy care. Evidence argues that guideline-adherent care results in better health outcomes, quality of care, shorter treatment period and reduced cost of care. The phase II of the PAAS guideline trail focuses on the adherence of Physical therapists on the implemented guideline through file monitoring to compare its effectiveness before and after the guideline. ‘Physical Therapy After Acute Stroke’ (PAAS) guidelines is a professional Physical therapy guideline for patients with stroke; based on scientific evidence, intended to optimize patient care ‘exclusively’ developed by the Physical therapists of Rumailah hospital. The goal of the PAAS guideline is to improve the quality, transparency, and uniformity of the physical therapy provided to patients whose main diagnosis is a stroke (cerebrovascular accident), throughout the chain of integrated care, by explicitly describing the Physical therapist's management of these patients on the basis of scientific research, adjusted where necessary on the basis of consensus among Physical therapy experts in primary, secondary and tertiary care, as well as associated professions in the field.
Objective
To find out the effectiveness of a structured clinical practice guideline in the quality of care and practice behavior of Physical therapist's practicing in stroke in the Physical therapy department of Rumailah hospital.
Alternative Hypothesis
A PAAS structured clinical practice guideline is an effective way to improve the quality of care and practice behavior of the stroke practicing Physical therapists of Rumailah hospital.
Design
The project was structured in an observational prospective cohort model implemented during the year 2015 in the Physical therapy unit, Rumailah hospital, which will include all the practicing Physical therapists of Physical therapy unit of Rumailah hospital. We have chosen Physical therapists even from other units who are seeing stroke patients at its different stages to maintain the continuum of care and coalesce the practice. We have identified the ‘Health Service Executive (HSE) model of change’ as the suitable model since it is to fit the health care organizations. HSE model of emphasizes 4 major steps: (1) Initiation of change, (2) Planning of the change, (3) implementation stage and (4) Mainstreaming comprises evaluating and learning from the change.
The change process was initiated by January 2015, around 30 Physical therapists from the concerned area were involved in the program. Staff orientation and competency to the guideline were introduced through an in-depth training programs with pre and post-tests, periodical refresher courses and information leaflets.
Method
A subspecialty stroke form was developed as an additional form to be added with the general stroke assessment form from 1 April 2015. The subspecialty stroke form exactly reflects the PAAS guideline in its evaluation and management. It was made mandatory that the sub specialty form has to be attached with the general neurology assessment form when assessing and managing a stroke case with effect from 1 April 2015. A retrospective file monitoring was initiated to understand the practice behaviour before the PAAS guideline implementation by selecting 2 closed files of stroke patients per therapist treated from 1 January to 29 March 2015. Post guideline monitoring was started between 21 June and 30 June 2015 to cover the closed files from 1 April to 29 June 2015. The same monitoring tool was used for both the phases of monitoring. Evaluations or goals where rated as met or not met. Use of at least 80% of the basic neurological and 60% of functional measurement tools were considered as ‘MET’ in the evaluation criteria. At least 5 recommended approaches per domain from any four out of five domains during the whole treatment course as per the assessment or review was decided as ‘MET’ for the Physical therapy management part. In the pre guideline phase total number of outcome measures and total number of approaches were used to reach up the conclusion.
Result
The PASS guideline adherence analysis revealed marked difference in the Physical therapy evaluation and practice of the hemiplegic patients. Since there was no organized systems before the implementation of PAAS guideline, the evaluation and treatment part was in the ‘NOT MET’ status as pre guideline implementation phase the 80 and 60% rule in evaluation phase and 4 out of 5 domain rule in the treatment part couldn't reached. The Guideline Task Force (GTF) decided to go with the direct counting of outcome measures and treatment techniques to compare between the two phases. Comparison of stroke specific outcome measures before and after the guideline implementation revealed that the use of stroke specific outcome measures became 74% post guideline compared to 36% in the pre guideline implementation phase (Fig. 1). Comparison of use of evidence based approaches for stroke care before and after the guideline implementation has shown that 73% post guideline compared to 35% pre guideline implementation (Fig. 2) with an overall 45% gain in evidence based care post guideline implementation (Fig. 3) A paired ‘t’ test was executed to analyses the pre and post file monitoring results. The ‘t’ statistics was observed as, t = 20.003, and p = 0.001; ie, 0.001 probability of this result occurring by chance, under the null hypothesis of no difference (table 1). The null hypothesis was rejected, since p < 0.05.
Conclusion
There is strong evidence (p = 0.001) that the structured guideline improved the practice behavior and quality of care post guideline implementation. In this data set, it improved use of outcome measures and evidence based approaches after the guideline implementation directly reflects the change in practice behavior and quality of care of stroke practicing Physical therapists of Rumailah hospital.
Implication
PAAS guidelines is a professional Physical therapy guideline for patients with stroke; based on scientific evidence, intended to optimize patient care, developed by the guideline task force of Physical therapy unit, Rumailah Hospital. PAAS Guideline offers recommendations for appropriate care. An evaluation of the guideline adherence and practice variations helps to fine tune the Physical therapy care to a highest possible standard of practice. A proper assessment of the relationship between the process of Physical therapy care and outcomes with a comprehensive set of process indicators will be implemented during the year 2016. We strongly believe that by means of systematic approach and implementation we can change the culture of practice so that it can suit and align with the international quality care in evidence based manner there by uplifting the corporation and its vision of becoming an internationally recognized center of excellence in health care. We believe that this ‘small changes will make a big difference in our health care system in the coming years’.
Physical Therapy, Practice behavior, Clinical practice guideline, Adherence
References
Field, Marilyn J., and Kathleen N. Lohr. “A provisional instrument for assessing clinical practice guidelines.” (1992). Grimshaw, Jeremy, et al. “Developing and implementing clinical practice guidelines.” Quality in Health care 4.1 (1995): 55.
Grimshaw, Jeremy, Martin Eccles, and Ian Russell. “Developing clinically valid practice guidelines.” Journal of evaluation in clinical practice 1.1 (1995): 37–48.
Grol, Richard. “Successes and failures in the implementation of evidence-based guidelines for clinical practice.” Medical care 39.8 (2001): II–46.
Grol, Richard, and Jeremy Grimshaw. “From best evidence to best practice: effective implementation of change in patients' care.” The lancet 362.9391 (2003): 1225–1230.
Rebbeck, Timothy R., et al. “A retrospective case-control study of the use of hormone-related supplements and association with breast cancer.” International journal of cancer 120.7 (2007): 1523–1528.
Woolf, Steven H., et al. “Clinical guidelines: potential benefits, limitations, and harms of clinical guidelines.” BMJ: British Medical Journal 318.7182 (1999): 527.
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Effectiveness of a Cost Effective Competency Workshop in Disseminating Knowledge of ‘Clinical Practice Guideline’ among Physical Therapist in a Tertiary Level Hospital in Qatar
By MS AjimshaBackground
Clinical guidelines are systematically developed statements designed to help practitioners and patients to make decisions about appropriate health care (Field and Lohr 1992). Higher quality of care and improved cost effectiveness are important goals in guideline development, optimally resulting in improved health (Woolf et al., 1999). Moreover, the process of guideline development addresses the need to decrease variability in professional practice, and practitioners' desire to legitimize their profession in the eyes of external stakeholders (Grimshaw et al., 1995a, Grimshaw et al., 1995b, Grol and Grimshaw 2003, Grol et al., 2004). The concept of evidence-based practice, supported by clinical guidelines, is a common aspect of health care today. Currently there is no formal training or education sessions to unify the Physical therapy practice in the department, which in turn resulting in greater practice variations and results. Grater variability in professional practice directly influences the outcome of patient care. To counteract this, Physical therapy unit, Rumailah hospital, Qatar has developed Physical therapy specific clinical practice guideline called ‘PAAS Guideline’ (Physical Therapy After Acute Stroke) to enhance the effectiveness and efficiency of post acute stroke Physical therapy care. Evidence argues that guideline-adherent care results in better health outcomes, quality of care, shorter treatment period and reduced cost of care. The phase I of the PAAS G adherence trail focuses on the knowledge dissemination phase of the clinical practice guideline through a structured competency workshop and its effectiveness. ‘Physical Therapy After Acute Stroke’ (PAAS) guidelines is a professional Physical therapy guideline for patients with stroke; based on scientific evidence, intended to optimize patient care ‘exclusively’ developed by the Physical therapists of Rumailah hospital. The goal of the PAAS guideline is to improve the quality, transparency, and uniformity of the physical therapy provided to patients whose main diagnosis is a stroke (cerebrovascular accident), throughout the chain of integrated care, by explicitly describing the Physical therapist's management of these patients on the basis of scientific research, adjusted where necessary on the basis of consensus among Physical therapy experts in primary, secondary and tertiary care, as well as associated professions in the field.
Objective
To find out the effectiveness of a cost effective competency workshop in disseminating knowledge of ‘Physical Therapy After Acute Stroke (PAAS) guideline’ among physical therapist of Rumailah Hospital, Qatar Method Participants and procedure: Through the intranet system of the Hamad Medical Corporation the competency workshop was announced well in advance of the date. The workshop and the competency training were made mandatory for all the Physical therapists practicing the neurological Physical therapy of Rumailah hospital. The supervisors of other Physical therapy department were informed to select physical therapists practicing stroke physical therapy in their unit in order to coalesce the practice across the corporation.
Workshop Structure
The program offered Physical therapists free one day eight hour PAAS guideline training. Upon successful completion of the workshop (60% marks in the post competency examination), participants will receive a ‘PAAS guideline competency certificate’ of one year validity. One full day was prepared as a competency training day by cancelling all the clinical related works of that day. The essential clinical duties of the day were rescheduled to one public holiday with 2 physical therapists on overtime coverage. The cost of the program was strictly controlled with an intention to create a cost effective workshop model which can be employed even in other units. We used our gym hall as the lecture room with all the furniture and audio-visual medias of the department. A two time simple snack was provided by using unit and hospital petty cash facility. All the printing and the publication works were done using the unit internal resources. Medical corporation media was informed to cover the event. The pre and post workshop competency exam were conducted at the beginning and very end of the program with 30 minutes given to answer 20 guideline related questions. A feedback recording was taken concerning the workshop and the arrangement in a structured course feedback form.
The training
Program agenda of the workshop was announced well in advance of the date (Table 1). All the topics were the direct reflections of the PAAS guideline converted to power point presentations. The 1-day, 8 hour training was organized in a ‘constructivist didactics’ way followed by clinically relevant examples as a way to maximize active participation by the attendees. A course and session objectives and lesson plan were given before every presentation. For every five slides of the powerpoint presentation, one review question was given inorder to refresh and refocus the attendees back to the session. The conclusion was made interactive by highlighting all the key points discussed on the session and by randomly asking the attendees to expand the key words into ideas that has learned. A five minute break was given for every presentation which was used as a question and answer session. The specialists of the department of the physical therapy, conducted the training. All the training presentations were unified in there structure and content and verified for errors well in advance of the course. The PAAS guideline was made available to all the participants before the workshop. Participating Physical therapists received author-developed handouts adapted from the workshop. The guideline was presented as seven sessions covering the seven topics of the PAAS guideline. The trainers did not target training with special conclusion nor were attendees told what would be learned and evaluated at the end of the training. However, participants were encouraged to increase the number and diversity of reflections used, diminish the frequency of questions and increase the use of open questions. PAAS guideline knowledge building was the clear goal of the training, but the emphasis was on the participants understanding and amalgamation of the given evidences with the current practices and experiences they have.
Competency examination
The participants of the PAAS guideline training were required to complete a guideline competency exam at the beginning and at the end of the training. The objectives of the competency exam was to evaluate and document the percentage of knowledge acquisition by the attendees. We believed that a respectable launch of the PASS guideline implementation should begin from an effective and equally distributed knowledge dissemination process. Twenty questions were created from the eight sessions of the guideline based on the Bloom's taxonomy. PAAS competency examination was designed with 10% questions to test the knowledge domain, 20% with comprehension, 25% with application, 20% analysis, 15% with synthesis and 10% to test the evaluation skills (Fig. 1). A total 30 minutes were provided to complete the examination. Test validation As a part of test validation 3 Physical therapy specialists with stroke rehabilitation experience from different hospital background were given the designed questionnaire and were asked to mark any questions that were unclear to them when they were taking the test. After the test, a discussion session was organized to ensure their understanding of the test questions was the same as what was intended. Two questions were adjusted based on this ‘internal pre-testing’ measure.
Results
The candidates were given the pre and post examination with the same question set. No information or clues were given to the participants regarding the posttest examination during the pretest or workshop. The same question set was used inorder to quantify the transfer of knowledge from the workshop. The maximum possible mark in the question set was 20. The average mark scored by the candidates in the pretest was six (6) out of 20 with standard deviation of (SD) 1.9. The average mark scored by the candidates in the post test was 14.5 out of 20 with standard deviation of (SD) 3.0 indicating difference of 8.5 marks with standard deviation of (SD) 1.6 between the two examinations. This has proven that the cost effective competency workshop succeeded in improving PAAS guideline knowledge to 141.7% compared to the pre workshop. Figure 2 represents the PAAS G examination mark analysis. A paired t test was executed to analyze the pre and post workshop test results. The t statistics was observed as, t = 21.496, and p = 0.001; ie, 0.001 probability of this result occurring by chance, under the null hypothesis of no difference. The null hypothesis was rejected, since p < 0.05 (Table 2).
Conclusion
There is strong evidence (p < 0.05) that the cost effective competency workshop improved PAAS G knowledge. In this data set, it improved marks, on average, by approximately 8.5 points or 141.7% with a 95% Confidence Interval (7.7–9.3). The feedback evaluation revealed an overall very good to excellent rating for the competency workshop (Fig. 3).
Implication
PAAS guidelines is a professional Physical therapy guideline for patients with stroke; based on scientific evidence, intended to optimize patient care, developed by the guideline task force of Physical therapy unit, Rumailah Hospital. PAAS Guideline offers recommendations for appropriate care. An evaluation of the guideline adherence and practice variations helps to fine tune the Physical therapy care to a highest possible standard of practice. A proper assessment of the relationship between the process of Physical therapy care and outcomes with a comprehensive set of process indicators will be implemented during the year 2016. We strongly believe that by means of systematic approach and implementation we can change the culture of practice so that it can suit and align with the international quality care in evidence based manner there by uplifting the corporation and its vision of becoming an internationally recognized center of excellence in health care. We believe that this ‘small changes will make a big difference in our health care system in the coming years’.
Physical Therapy, Practice behavior, Clinical practice guideline, Adherence
References
Field, Marilyn J., and Kathleen N. Lohr. “A provisional instrument for assessing clinical practice guidelines.” (1992). Grimshaw, Jeremy, et al. “Developing and implementing clinical practice guidelines.” Quality in Health care 4.1 (1995): 55.
Grimshaw, Jeremy, Martin Eccles, and Ian Russell. “Developing clinically valid practice guidelines.” Journal of evaluation in clinical practice 1.1 (1995): 37–48.
Grol, Richard. “Successes and failures in the implementation of evidence-based guidelines for clinical practice.” Medical care 39.8 (2001): II–46.
Grol, Richard, and Jeremy Grimshaw. “From best evidence to best practice: effective implementation of change in patients' care.” The lancet 362.9391 (2003): 1225–1230.
Woolf, Steven H., et al. “Clinical guidelines: potential benefits, limitations, and harms of clinical guidelines.” BMJ: British Medical Journal 318.7182 (1999): 527.
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A Knitted/Non-Woven Composite Polycaprolactone Scaffold for Tissue Engineering of the Aortic Valve
The use of mechanical or animal derived valves were replaced by tissue engineered (TE) heart valves (HV) due to their disadvantages such as thrombogenicity and poor durability. A tissue engineered valve, ideally mimics the function of a native valve by responding to growth and physiological forces. It is also believed to have a longer life span, close to that of a native valve. Knitting is a versatile technology, which offers a large spectrum of products and solutions that are of interest in heart valve (HV) tissue engineering (TE). One of the main advantages of knitting is its ability to construct complex geometries and structures by precisely assembling the yarn by forming interlocked loops to desired positions. Furthermore, the yarns can be knitted precisely to reproduce the anisotropic structure of native heart valve. The advantages of this industry has convinced scientists to employ knitting to construct a HV scaffold. Inherently the knitting yields strong but open structures that individually, cannot be used due to their permeability to the fluids. Several studies to seal the pores with hydrogels have shown poor results. Therefore, a new composite material, which is a combination of knitted structure with non-woven structure of the same polymer, namely bioresorbable polycaprolactone (PCL) has been developed and described in this study. The knitted layer provides the desired mechanical stability while nano-fibers of non–woven PCL seals the construct, and makes it functional. Moreover, both types of employed fibers (micro and nano) facilitate the oriented growth of cells in a longitudinal direction, and, consequently, enable the deposition of extra-cellular matrixes (ECM) proteins in an oriented manner. This technique, therefore, has a potential to provide a functional composite PCL-based scaffold. An additional task of this report is to describe example of interaction between tissue and textile engineers. To enable that interaction the textile engineers had to gain a basic understanding of structural and mechanical aspects of the heart valve and, tissue engineers needed to acquire the knowledge of tools and capacities that are essential in knitting technology.
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Neurological Disorders: A Network Perspective from Dense Electroencephalography
Authors: Mahmoud Hassan and Fabrice WendlingIntroduction
Most of neurological disorders are network-based diseases. The networks associated with these diseases usually involve spatially disturbed brain regions. Thus efforts were recently evolving from identifying pathological “zones” toward identifying “networks”. In a very recent review, Fornito and colleagues revealed that the identification of alterations in brain networks is one of the most promising paradigms in brain disorders research (Fornito and Bullmore, 2014; Fornito et al., 2015). So far, approaches based on graph theory have characterized the brain networks as sets of nodes connected by edges (Bullmore and Sporns, 2009). Once the nodes (brain regions) and edges (functional/structural connections between regions) are defined from neuroimaging technique, methods based on graph theory may be used to describe the topological properties of the identified networks. This network-based analysis has been largely used to investigate normal (Bressler and Menon, 2010) and pathological (Fornito et al., 2015) brain activities from numerous modalities. It has been used in many clinical applications such as Alzheimer's disease (He et al., 2008; Lo et al., 2010; Mallio et al., 2015; Stam et al., 2007), schizophrenia (Fornito et al., 2011; Liu et al., 2008; van den Heuvel et al., 2013) and autism (Guye et al., 2010; Li et al., 2014). However, a precise tracking of the spatiotemporal dynamics of large-scale pathological networks is still an unsolved issue (Hutchison et al., 2013). The only noninvasive technique that provides the sufficient temporal resolution to track dynamics of brain activity at millisecond scale is the Electro/Magneto encephalogram (EEG/MEG).
Methods
Therefore, the focus of our work is to develop advanced methods to, noninvasively, identify dynamics of functional brain networks using dense EEG signals (256 electrodes). The key advantage of our method, called ‘EEG source connectivity’ (Fig. 1), is the possibility of identifying functional brain networks with excellent temporal (∼ 1 ms) and spatial resolutions (Hassan et al., 2015a; Hassan et al., 2014; Hassan et al., 2015b). The EEG source connectivity involves two main steps: i) the reconstruction of regional time series by solving the EEG inverse problem and ii) the estimation of the functional connectivity using phase synchronization among oscillations present in the time-courses of reconstructed regional time series. The method was originally developed to track dynamics of functional brain networks during short time cognitive activity such as picture naming task ( < 1 second) (Hassan et al., 2015a). In this abstract, we show the first results of applying EEG source connectivity method to two neurological disorders: Epilepsy and Parkinson's disease. Figure 1: Illustrative structure of the proposed method. Dense EEG were used to record data from patients (and healthy control). Structural MRI images will be also recorded, segmented and then anatomically parcellated into a desired number of brain regions (regions of interest). The functional connectivity was then computed giving rise to high-resolution functional brain networks. These networks (graphs) will be finally characterized (quantified) using approach from graph theory to characterize the brain networks (regions and sub regions) involved in the analyzed pathology.
Results
First, in the context of epilepsy, data were recorded from epileptic patients who underwent a full pre-surgical evaluation for drug-resistant partial epilepsy. The patients had a comprehensive evaluation including detailed history and neurological examination, neuropsychological testing, structural MRI, standard 32-channels (Micromed) as well as High-Resolution 256-channels (EGI, Electrical Geodesic Inc.) scalp EEG with video recordings and intracerebral EEG recordings (SEEG). We applied our method to identify epileptogenic networks from the scalp dense-EEG. We also estimated the functional network from depth-EEG. The results revealed a very good matching between networks identified from noninvasive EEG and those obtained using the intra-cerebral electrodes (ground truth). We were able, for the first time from scalp recordings, to identify the network of brain regions (nodes) involved in the generation of the seizure as selected by the epileptologist. Second, we recently applied the EEG source connectivity method to detect alterations in functional networks involved in cognitive impairments. Dense-EEG (128 electrodes) were recorded during task-free paradigm (resting state, eye closed) to produce whole-brain functional connectivity networks in patients with different cognitive phenotypes (Dujardin et al., 2013): 1) cognitively intact patients, 2) patients with mild cognitive impairment and 3) patients with very severe cognitive impairment. Functional connectivity was assessed between each pair of 68 brain regions in 124 patients at different EEG frequency bands. Network measures were realized at global level topology, region-wise connectivity and edge-wise connectivity. Using Network Based Statistics (NBS) (Zalesky et al., 2010), results showed significant differences at alpha band (7–13 Hz) between all groups. The quantification of the networks showed that most of significant alterations (decreased connections) were frontotemporal (functional connections between frontal and temporal lobes) which perfectly match with previous findings of cognitive impairments in patient with neurodegenerative disorders (Pievani et al., 2011).
Discussion
We consider that the identification of pathological brain networks from noninvasive EEG recordings is a topic of great interest. The results of the EEG source connectivity methods on cognitive task (Hassan et al., 2015a) as well on neurological disorders such as epilepsy and Parkinson's disease as presented here, may open new perspectives in the clinical use of such approach. These network dysfunctions may be specific to the clinical syndromes and, in Parkinson's disease and frontotemporal dementia for instance, network disruption may track the pattern of pathological alterations. We speculate that our findings might have practical repercussions for diagnostic purpose, allowing earlier detection of neurodegenerative diseases and tracking of disease development.
Acknowledgment
This work has received a French government support granted to the CominLabs excellence laboratory and managed by the National Research Agency in the “Investing for the Future” program under reference ANR-10-LABX-07-01.
References
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Antibiotic Prophylaxis in Surgical Procedures and the Threats of Fecal Carriage of the ESBL Producer Organisms
More LessHealthcare associated infections (HAI) are unnecessary adverse events as they are preventable with proper implementation of the best evidence about the topic. The surgical site infections (SSI) account the 17% of HAI in the U.S. In South Asian countries the pooled estimate of SSI incidence according to a recently published meta-analysis was 8.6%, meanwhile a report of Rosenthal and colleagues describes higher incidence in low-income countries compared with U.S. data. In addition to the patient safety issues, the economic impact of these infections should be considered. In U.S. the total annual costs for the 5 major infections were $9.8 billion, with SSI contributing the most to overall costs (33.7% of the total), followed by the devices associated infections and Clostridium difficile infections.
In European university hospital, the mean additional postoperative length of hospital stay was 16.8 days; and the mean additional in-hospital duration of antibiotic therapy was 7.4 days. The perioperative antibiotic prophylaxis constitutes a key prevention practice, with a high quality of evidence for its implementation. Antibiotic prophylaxis is aimed to reduce the incidence of SSI by preventing the development of infection caused by organisms that colonize or contaminate the surgical site. The adequate use of perioperative antibiotic prophylaxis can reduce the rate of SSI in up to 50%. Multidrug-resistant organisms Antimicrobial resistance is a worldwide problem with a significant impact in morbidity and mortality at the community level, and also in health care facilities. Nearly 20% of pathogens reported from all healthcare associated infections to NHSN (CDC) were multidrug-resistant organisms (MDRO).
The CDC estimates that the annual impact of antibiotic-resistant infections on the U.S. economy is $20–35 billion in excess direct health care costs, with additional costs to society for lost productivity as high as $35 billion per year and 8 million additional days in hospitals. Extended-spectrum β-lactamase producing Enterobacteriaceae is frequent in healthcare associated infections and in the community.
Worldwide dissemination of plasmid-borne extended-spectrum b-lactamases (ESBL) is a public health concern since community-acquired infections caused by ESBL-producing Escherichia coli (among other Enterobacteriaceae) are becoming increasingly frequent. The problem of ESBL production is no longer limited to community-onset or hospital-acquired infections. Faecal carriage of ESBL-producing Enterobacteriaceae, by asymptomatic individuals, has been noted in many parts of the world. There is observed a variable frequency of ESBL carriage in diverse studied population from Korea (9.3%), UK (11.3%), Sweden (6.8%) and Paris (6%). Studies conducted in Eastern Mediterranean countries has shown fecal carriage of 12.7% in Saudi Arabia, 13.4% in Lybia and 21% in Egypt. No reports about studies conducted in Qatar have been published. MDRO prevention approaches can be broadly categorized and should include measures to prevent infection among patients who are uninfected carriers of an MDRO. The problem Appendicitis is the most common reason for acute abdominal pain in with a lifetime risk of 8.6% for males and 6.7% for females. Appendectomy constitutes the principal emergency surgical procedure in The Cuban Hospital (Dukhan, Qatar). During the period January, 2013-October, 2015 have been performed 561 appendectomies, been reported 22 (4.1%) cases with surgical site infections. As a consequence, an excess of the length of stay of 3.8 days and antimicrobial consumption of 77.84 daily defined doses was identified in patients with SSI compared with those without SSI. In culture samples collected during surgical procedure, due to the evidence of fluid in the surgical site, was identified Escherichia coli ESBL producer in 23.3% of the positive cultures, meanwhile in positive cultures of surgical site infections the 65% of the microbial agents identified were extended spectrum beta-lactamase producers (E.coli, 12 patients; Klebsiella pneumonia, 1 patient). The standard perioperative prophylaxis performed in our patients is a combination of cefuroxime (beta-lactam antimicrobial) and metronidazole. Compliance with antibiotic prophylaxis in patients with surgical site infection was 86.4%, 100% and 91% for timely administration, proper doses and selection of the antimicrobials and discontinuation before 24 hr after the surgical procedure, respectively. – Research questionso Is the fecal carrier of ESBL producer organisms at increased risk of surgical site infections after appendectomy or others surgical procedures that involve intestinal incision? o Could be prevented these surgical site infections with a targeted antimicrobial prophylaxis? – Hypothesiso Fecal carriage of ESBL producer organisms increases the risk of surgical site infections in patients with appendicitis or colon surgeries, which could be prevented by a targeted antimicrobial prophylaxis. – Research o A cohort study of patients who underwent to appendectomies and colon surgery. – Expected resultso Identify the prevalence of fecal carriages of ESBL producer organismso Describe the risk of acquired surgical site infection in fecal carriage of ESBL producer organisms. o Analyze the potential use of targeted antimicrobial prophylaxis in surgical procedures that involve the colon. – Conclusiono The prevention of surgical site infections constitutes a challenge in the daily medical practice. o The changing environment of the MDROs in the community imposes of a challenge for healthcare professionals, which should review its practices according to the new trends of antimicrobial resistance and the frequency of microbial colonization in the population. Healthcare associated infections (HAI) are unnecessary adverse events as they are preventable with proper implementation of the best evidence about the topic.
The surgical site infections (SSI) account the 17% of HAI in the U.S. (Yokoe DS, 2014). In South Asian countries the pooled estimate of SSI incidence according to a recently published meta-analysis was 8.6% (95% CI, 5.8%–11.4%), meanwhile a report of Rosenthal and colleagues describes higher incidence in low-income countries compared with U.S. data (Rosenthal, 2013; Lin Ling M, 2015).
In addition to the patient safety issues, the economic impact of these infections should be considered. In U.S. the total annual costs for the 5 major infections were $9.8 billion (95% CI, $8.3–$11.5 billion), with surgical site infections contributing the most to overall costs (33.7% of the total), followed by the devices associated infections and Clostridium difficile infections (Zimlichman E, 2013).
In European university hospital, the mean additional postoperative length of hospital stay was 16.8 days (95% CI, 13–20.6 days); and the mean additional in-hospital duration of antibiotic therapy was 7.4 days (95% CI, 5.1–9.6 days) (Weber 2008). As is widely shown in the literature from high-income countries, including the United States, the incidence of HAI can be reduced by as much as 30%, and by 55% in the case of SSI, through the implementation of an effective surveillance approach (Umscheid CA, 2011).
The perioperative antibiotic prophylaxis constitutes a key prevention practice, which according to the 2014 SHEA recommendation achieve a high quality of evidence for its implementation (Anderson, 2008) (Yokoe, 2014). Antibiotic prophylaxis is aimed to reduce the incidence of SSI by preventing the development of infection caused by organisms that colonize or contaminate the surgical site.
The antimicrobial agents for prophylaxis should be: 1) active against the pathogens most likely to contaminate the surgical site, 2) given in an appropriate dosage and at a time that ensures adequate serum and tissue concentrations during the period of potential contamination, 3) Safe, and 4) administered for the shortest effective period to minimize adverse effects, the development of resistance, and costs. The predominant organisms causing SSIs after clean procedures are skin flora. In clean-contaminated procedures, including abdominal procedures and heart, kidney, and liver transplantations, the predominant organisms include gram-negative rods and enterococci in addition to skin flora. (Bratzler DW, 2013). The main target of antibiotic prophylaxis is the wound and should be considered, in addition of choose the proper antimicrobial (according to the surgical site or procedure), the timing of administration and it duration after the surgical procedure. The adequate use of perioperative antibiotic prophylaxis can reduce the rate of SSI in up to 50%. Multidrug-resistant organisms Antimicrobial resistance is a worldwide problem with a significant impact in morbidity and mortality at the community level, and also in health care facilities. Nearly 20% of pathogens reported from all healthcare associated infections to NHSN (CDC) were multidrug-resistant organisms (Sievert DM, 2013).
The Centers for Disease Control and Prevention (CDC) estimates that the annual impact of antibiotic-resistant infections on the U.S. economy is $20–35 billion in excess direct health care costs, with additional costs to society for lost productivity as high as $35 billion per year and 8 million additional days in hospitals. (Report of the US President, 2014). Extended-spectrum β-lactamase producing Enterobacteriaceae (ESBL) is frequent in healthcare associated infections and in the community.
Worldwide dissemination of plasmid-borne extended-spectrum b-lactamases (ESBLs) is a public health concern since community-acquired infections caused by ESBL-producing Escherichia coli (among other Enterobacteriaceae) are becoming increasingly frequent (Pitout JDD, 2005).
The problem of ESBL production is no longer limited to community-onset or hospital-acquired infections. Faecal carriage of ESBL-producing Enterobacteriaceae, particularly the CTX-M producers, by asymptomatic individuals has been noted in many parts of the world. There is observed a variable frequency of ESBL carriage in diverse studied population from Korea (9.3%), UK (11.3%), Sweden (6.8%) and Paris (6%) (Beom King J, 2014; Wickramasinghe NH, 2012, Stromdahl H, 2011, Nicolas-Chanoine MH, 2013). Studies conducted in Eastern Mediterranean countries has shown fecal carriage of 12.7% in Saudi Arabia (Kader AA, 2009), 13.4% in Lybia (Ahmed SF, 2014) and 21% in Egypt (Bassyouni RH, 2015). No reports about studies conducted in Qatar have been published. In the face of rising resistance rates and limited treatment options, prevention of MDRO infections is paramount. MDRO prevention approaches can be broadly categorized and should include measures to prevent infection among patients who are uninfected carriers of an MDRO. The Goals of the National action plan to combat antibiotic resistant bacteria (White House, Washington, 2015) define the need of the use of a rapid test for early diagnosis of multidrug-resistant organisms. The problem Appendicitis is the most common reason for acute abdominal pain in with a lifetime risk of 8.6% for males and 6.7% for females (Flum DR, 2015). Appendectomy, mainly using the laparoscopic technique, constitutes the principal emergency surgical procedure in The Cuban Hospital (Dukhan, Qatar). During the period January, 2013-October, 2015 have been performed 561 appendectomies, been reported 22 (4.1%) cases with surgical site infections. As a consequence, an excess of the length of stay of 3.8 days and antimicrobial consumption of 77.84 daily defined doses was identified in patients with SSI compared with those without SSI. In culture samples collected during surgical procedure, due to the evidence of fluid in the surgical site, was identified Escherichia coli ESBL producer in 23.3% of the positive cultures, meanwhile in positive cultures of surgical site infections the 65% of the microbial agents identified were extended spectrum beta-lactamase producers (E.coli, 12 patients; Klebsiella pneumonia, 1 patient). The standard perioperative prophylaxis performed in our patients is a combination of cefuroxime (beta-lactam antimicrobial) and metronidazole. Compliance with antibiotic prophylaxis in patients with surgical site infection was 86.4%, 100% and 91% for timely administration, proper doses and selection of the antimicrobials and discontinuation before 24 hr after the surgical procedure, respectively. – Research questions o Is the fecal carrier of ESBL producer organisms at increased risk of surgical site infections after appendectomy or others surgical procedures that involve intestinal incision? o Could be prevented these surgical site infections with a targeted antimicrobial prophylaxis? – Hypothesis o Fecal carriage of ESBL producer organisms increases the risk of surgical site infections in patients with appendicitis or colon surgeries, which could be prevented by a targeted antimicrobial prophylaxis. – Research o A cohort study of patients who underwent to appendectomies and colon surgery. – Expected results o Identify the prevalence of fecal carriages of ESBL producer organisms o Describe the risk of acquired surgical site infection in fecal carriage of ESBL producer organisms. o Analyze the potential use of targeted antimicrobial prophylaxis in surgical procedures that involve the colon. – Conclusion o The prevention of surgical site infections constitutes a challenge in the daily medical practice. o The changing environment of the multidrug-resistant organism in the community imposes of a challenge for healthcare professionals, which should review its practices according to the new trends of antimicrobial resistance and the frequency of microbial colonization in the population.
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Chlamydia Pneumoniae and Carotid Plaque Morphology: The Link with Ischemic Stroke
Authors: Ahmed D Khattab, Ann Walkley, Ibtisam S Ali, David Wertheim and Leopold J StreletzBackground
There has been some anecdotal evidence linking certain infectious pathogens (such as Chlamydia pneumoniae) with stroke. C. pneumoniae infection may be one of several contributing factors for the development of inflammation of blood vessels and atherosclerosis. Furthermore, a number of inflammatory markers (such as plasma CRP, fibrinogen, IL-6, IL-1ra, ESR, WCC) have recently been linked with acute ischemic stroke. However, their value in predicting short and long-term prognosis has been questioned and deemed to be not useful in defining outcomes due to the lack of evidence and cost implications.
Aims
The aims of this study are to (i) investigate the presence of C. pneumoniae in both echogenic and echolucent carotid plaques; and (ii) explore their role in the destabilization of the plaque, leading to embolization and cerebrovascular events.
Methods
(i) Study design: A prospective study involving carotid plaque specimens collected from routine endarterectomy surgical operations. Carotid plaques were removed en bloc during surgery to preserve the entire plaque structure. (ii) Carotid plaque samples: Twenty specimens of carotid atherosclerotic plaques (ten predominantly echolucent, Types I & II and ten predominantly echogenic Types III & IV) were used. The non-invasive ultrasonic appearance (i.e. echogenicity or echolucency) and the quantitative grading of these plaques were determined pre-operatively using duplex scanning aided by computerized measurements according to the criteria adopted by Gray-Weale et al. (1988). (iii) Immunohistochemistry: Levels of C. pneumoniae, Matrix Metalloproteinase-3 (MMP3), Nitric Oxide Synthase (NOS), Superoxide Dismutase (SOD) enzymes in echogenic (fibrous) and echolucent (lipid-laden) atherosclerotic carotid plaques were determined using immuno-histochemical and Western blotting techniques. (iv) Histological methods: Haematoxylin-Eosin stain was performed to stain the slides that will be used for morphological studies by light microscopy. For Laser Scanning Confocal Microscopy (LSCM), slides were stained with saturated aqueous fluorescein for a few minutes and then dehydrated, cleared and mounted in DPX. Carotid plaque specimens were first examined by light microscopy (at magnification 10, 40 times) to characterize the following histological features: necrosis, calcification, fibrous cap, erosion or ulceration, hemorrhage, fibrous tissue and lipid content. Sections from the same specimens were then analyzed using LSCM; slides were viewed with 488 excitation and 515 LP emission. The presence or absence as well as the pattern of distribution of these markers (proteins) were correlated with the histological and preoperative ultrasonic appearances of the plaques.
Results
Ultrasound imaging of carotid plaques revealed 10 with echolucent (lipid-laden/unstable) properties and 10 with echogenic (fibrous/stable) features. Intense immune-reactivity for C pneumoniae was observed in two thirds of echolucent plaques, clustering near endothelial cells of the intimal region, and in the neo-endothelial regions of the specimens. By contrast, low level and scattered C pneumoniae immune-reactivity was observed in echogenic plaques. MMP-3 (stromelysin) level was higher in echolucent than in echogenic plaques. High levels of this enzyme were observed near regions of ulceration, necrosis and in areas where the fibrous cap was thin or torn. Isoforms of NOS enzymes were seen in all carotid plaques irrespective of intra-plaque features however, levels of inducible NOS (NOS-II) were higher in echolucent than in echogenic plaques. Higher levels of immune-reactive SOD were also observed in plaques with higher degree of stenosis (more than 75%–80% measured by ultrasound scan). No direct relationship was evident between the neurological features experienced by the study group and the immuno-histochemical findings. There was however a relationship between the morphology of the plaque and the immuno-histochemical results. Both bright-field microscopy and Laser Scanning Confocal Microscopy (LSCM) were used to generate 3D images of surgically removed carotid plaques. 3D imaging of carotid plaques, using LSCM showed that most specimens were predominately composed of lipid material, comprising necrotic core of amorphous debris and cholesterol clefts, with varying degrees of fibrous tissue present in all plaques. Regions of actual fibrous cap disruption and some ulceration were also seen. Fraying of the fibrous cap was notable with fibrous cap erosion and exposure of underlying necrotic core to lumen. The extent of breaks in the fibrous cap varied with each plaque. Evidence of carotid plaque vulnerability (to rupture) was demonstrated by reduced fibrous cap thickness, a large lipid-necrotic core, and increased inflammatory cells infiltrate with evidence of cracking.
Discussion
Although the findings of this study are suggestive that C. pneumoniae may be involved in the worsening and destabilization of the carotid atherosclerotic plaque, more evidence is needed to ascertain whether C. pneumoniae infection may be an independent, modifiable risk factor for ischemic stroke. Results of this study also showed that MMP3 or its pro-enzyme may play an important role in digesting fibrous tissue of the plaque, leading to thinning or tearing of the fibrous cap. This might result in subsequent destabilization of the plaque, leading to embolization and cerebrovascular events. Furthermore, increased level of SOD expression in carotid plaques might be linked to the degree of stenosis of the affected carotid artery. Enzymes identified in this study may have been influenced by (i) inflammatory conditions prevailing in these plaques (e.g., C. pneumoniae might be responsible for triggering cascades of inflammatory events leading to activation of these enzymes), or (ii) shear stress which might be responsible for stimulation of these enzymes. The 3D geometry of carotid plaque also showed evidence of shearing stresses, resulting from fluid flow which might contribute to the degree of instability of the plaque. This is a complex process which might also include the mechanical activation of enzymes such as matrix metalloproteinases, nitric oxide synthases and Superoxide Dismutase. The behavior of these enzymes in response to fluctuations in the velocity field in both echogenic and echolucent plaques is yet to be investigated. Possible activation of these enzymes by fluid dynamical instabilities and the implications of such activation on the destabilization and progression of atherosclerotic plaques require further investigation. Once the role of 3D geometry and microrheology on plaque stability has been investigated and quantified, more opportunities will be available for translating the results into clinical applications.
Conclusion
There is a need for stronger evidence to assist in the diagnosis, treatment, and secondary prevention of stroke in patients in whom an infectious cause for stroke is probable. It has been suggested that mechanically induced or flow-sensitive enzymes contain positive and negative shear stress response elements in their encoding genes and can be stimulated or suppressed according to the nature of blood flow. However, it is still not possible to show any definite link between specific enzyme(s) and cerebrovascular events. Such an association is probably multifactorial and mediated by a combination of the degree of stenosis, plaque morphology, dynamic and biological factors. We are currently investigating the link between certain inflammatory markers and cerebral blood flow and cerebral auto-regulation in patients presenting with Transient Ischemic Attack (TIA or mini stroke) for the first time to explore further the role of inflammation in stroke. This study has just started; it involves 200 patients recruited from Qatar and UK. One of its outcomes will be to correlate impaired cerebral auto-regulation with a range of pro-inflammatory and anti-inflammatory markers in first time TIA patients. In doing so, we will study the profile, rather than just the level, of these inflammatory markers in each patient, taking into account the time lapse between onset of symptoms and the collection of blood specimen (for cytokines analysis) from each patient. “Part of this study was made possible by grant NPRP 6 – 565 – 3 – 141 from the Qatar National Research Fund (a member of Qatar Foundation). The statements made herein are solely the responsibility of the author[s].”
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Analysis of the Relationship between Physical Self-Concept and Body Composition
Authors: Zsuzsanna Kneffel, Suhair Saleh, Wajiha Ghazi, Deema Qawassmi and Lina MajedBody image is a psychological construct which refers to self-concept including self-image and feelings an individual perceives regarding his or her body. Several studies have examined how women subjectively perceive their bodies in Western cultures compared to objective measures. However, limited studies have examined this relationship among women in the Gulf region (e.g., Qatar) in which Islamic traditional clothing (i.e., Abaya) is typically adopted and possible differences in the judgment of a healthy body shape might be found. The purpose of this study was to see whether there is a connection between the objective body composition measures [i.e., body weight (BW), body height (BH), body mass index (BMI)] and the subjective measures of physical self-description. We expect to find a tendency among females in this study to estimate a thinner body image compared to their current/measured one.
Methods
female volunteers (18–26 years) were recruited from Qatar University. We measured their body composition (i.e., BW, BH and BMI). We used the short version of the Physical Self-Description Questionnaire (PSDQ), a multidimensional physical self-concept instrument with 11 original subscales including: body fat, health, appearance, global physical self-concept. The collected data for all variables were analyzed using Statistical software (v.12, DELL) for correlations using Pearson's coefficients.
Results
Based on the BMI results, 25.7% of the participants were classified as overweight or obese (12.3% and 13.4%, respectively). Results indicated a significant negative moderate correlation between the global physical self-concept on one side and BMI (r = − 0.27) and BW (r = − 2.0) on the other. Furthermore, the perceived body fat showed significant negative correlation with BMI (r = − 0.57) and with BW (r = − 0.52). The inter-correlation within the subscales showed that the perceived body fat was significantly correlated with appearance (r = 0.25), health (r = 0.16) and global physical score (r = 0.34).
Conclusion
Our results indicated a clear and logic relationship between perceived global physical self-concept scores and participants' body composition (i.e., negative correlation). However, an interesting result in line with our hypothesis and concerning the way participants perceived their own body fat indicates a negatively correlation with BMI and BW. In the studied population, a possible interpretation could be done based on the positive link revealed between perceived body fat, perceived appearance, perceived health and global physical score. Indeed, this could indicate that the ideal perceived body might be different and higher than norms presented in the World Health Organization classification. To get further insights on the nature of these relationships, we have started new investigations on the relationship between the other subscales of physical self-description and a comprehensive physical fitness test (ALPHA-FIT Test, UK).
Keywords
physical self-concept, body image, body composition, Qatar
This publication was made possible by UREP grant ν17-044-3-011 from the Qatar national research fund (a member of Qatar foundation). The statements made herein are solely the responsibility of the authors.
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Corneal Confocal Microscopy Identifies Neuronal Pathology in Patients with Stroke Independent of Glycemic Status and Cerebral Pathology on MRI
Background
Worldwide, cerebrovascular disease (CVD) is the leading disease-related cause of chronic disability; the second most common cause of death and dementia; and a significant burden to patients, caregivers, and healthcare systems. Major risk factors for stroke include diabetes, hypertension, smoking and dyslipidemia which are highly prevalent in the gulf region. Indeed in Qatar, the incidence of cerebrovascular disease is increasing and most patients have major vascular risk factors. In data from the HMC Stroke Registry ∼71% of patients presenting with stroke had diabetes and indeed diabetes was undiagnosed at the time of presentation in 35% of patients. Current imaging techniques to detect early sub-clinical cerebral damage and hence those at risk of stroke includes computerized tomography (CT) and magnetic resonance imaging (MRI). MRI in particular can detect features of small vessel disease such as accumulating silent infarcts, cerebral microbleeds [CMB], periventricular white matter hyperintensity and perivascular spaces which all predict a higher risk of stroke. However, these abnormalities provide a measure of vascular and not neuronal integrity and it is not feasible or practical to undertake MRI simply to identify those at risk of stroke. There is therefore an unmet need for a rapid, non-invasive, sensitive, cost-effective, reproducible and easily imaging biomarker for neuronal damage in subjects at risk of stroke. We have pioneered the technique of corneal confocal microscopy (CCM). Our studies (NIH (5RO1-NS46259-03, R01DK077903-01A1 NINDS), JDRF (17-2008-1031, 8-2008-362)) have shown that corneal confocal microscopy (CCM) can quantify early axonal damage in diabetic neuropathy (1), reliably (2), with high sensitivity and specificity (3). Furthermore, we have shown that subjects with impaired glucose tolerance (IGT) and other vascular risk factors also show corneal nerve loss using CCM (4). Furthermore, these abnormalities improve with an improvement in blood pressure, lipids and HbA1c, all risk factors for stroke (5) and with change in glucose tolerance (6). We have recently published a large normative reference database (7) and developed an automated image analysis algorithm to enable rapid and objective quantification of corneal nerve morphology (8). We therefore hypothesized that CCM may identify corneal nerve loss driven by the common vascular risk factors which may lead to stroke and thereby provide a surrogate for cerebral neuronal loss. Hence, CCM may allow us to identify subjects who may be at high risk of developing stroke and enable risk stratification and targeted risk factor intervention in these individuals.
Aim
We undertook CCM in a cohort of patients admitted to HMC with a clinical and radiological diagnosis of stroke.
Methods
17 stroke patients (age: 53.13 ± 9.09, years) and 15 age-matched healthy control participants (age: 55.30 ± 8.98, years) underwent corneal nerve assessment using CCM (Heidelberg HRT III) to quantify corneal nerve fiber density (CNFD)(no./mm2), corneal nerve fiber branch density (CNFBD)(no./mm2), corneal nerve fiber nerve length (CNFL)(mm/mm2) and corneal nerve fiber tortuosity (TC) and metabolic testing. Stroke patients underwent detailed neurological assessment to define the severity of the stroke using a National Institute of Health Stroke Scale (NIHSS), 3D Carotid Doppler and 3 Tesla MRI. Stroke patients were stratified into different groups for analysis: Normoglycemia (HbA1c < 5.7) (age: 57 ± 8.12, years, n = 5) v dysglycemia (HbA1c ≥ 5.7), n = 12); neurological disability: NIHSS < 4 (n = 9) v NIHSS ≥ 4 (n = 8), Pathology on MRI: < 10 silent infarcts n = 5 v > 10 silent infarcts (n = 4), patients with periventricular white matter hyperintensity (n = 11) v no periventricular white matter hyperintensity (n = 4).
Results
There was significant difference in HbA1c (8.51 ± 2.35; 5.72 ± 0.36, %, p < 0.001) between stroke patients with dysglycemia and healthy control participants and patients with dysglycemia compared to normoglycemia (8.51 ± 2.35; 5.18 ± 0.35, %, p < 0.009). There was no difference in the total cholesterol (4.96 ± 1.62, 5.34 ± 0.80, mmol/L, p < 0.457), triglycerides (1.32 ± 0.35, 1.64 ± 0.48, mmol/L, p < 0.118), HDL (1.73 ± 1.57, 1.44 ± 0.47, mmol/L, p < 0.527), LDL (2.92 ± 1.42, 3.16 ± 0.69, mmol/L, p < 0.593), hypertension (hypertensive/normal tension, 1/11, 0/15, p < 0.255), height (172.00 ± 4.24, 169.24 ± 9.85, cm, p < 0.708) weight (88.50 ± 13.44, 81.51 ± 13.37, kg, p < 0.500) or BMI (30.00 ± 2.83, 28.47 ± 4.44, Kg/m2, p < 0.649) between stroke patients and control subjects. There was a significant reduction in CNFD (30.47 ± 5.76; 39.50 ± 8.49; p < 0.043) but no change in CNBD (117.50 ± 25.99; 100.54 ± 37.30; p < 0.365), CNFL (29.49 ± 2.65; 27.45 ± 5.56; p < 0.447) or CNFT (19.27 ± 5.07; 15.32 ± 3.94; p < 0.091) in the stroke patients with NGT as compared to the healthy control participants. There was a significant reduction in CNFD (30.17 ± 5.68; 39.06 ± 8.36; p < 0.004) and increase in CNBD (127.71 ± 34.09; 97.80 ± 37.49; p < 0.042) and CNFT (18.57 ± 4.36; 14.93 ± 4.08; p < 0.035) but no change in CNFL (27.06 ± 4.76; 26.97 ± 5.67; p < 0.965) in stroke patients with dysglycemia as compared to the healthy control participants. There was no difference in CNFD (30.17 ± 5.68; 30.47 ± 5.76; p < 0.921), CNBD (127.71 ± 34.09; 117.50 ± 25.99; p < 0.559), CNFT (18.57 ± 4.36; 19.27 ± 5.07; p < 0.777) or CNFL (27.06 ± 4.76; 29.49 ± 2.65; p < 0.306) between stroke patients with and without dysglycemia. There was no significant difference in CNFD (30.36 ± 5.26; 30.14 ± 6.17; p < 0.941), CNBD (123.46 ± 32.58; 126.12 ± 32.37; p < 0.869), CNFT (19.26 ± 5.30; 18.22 ± 3.48; p < 0.645) or CNFL (27.05 ± 4.38; 28.60 ± 4.38; p < 0.479) in stroke patients with NIHSS < 4 compared to NIHSS ≥ 4. There was no significant difference in CNFD (30.52 ± 5.27; 32.16 ± 7.73; p < 0.715), CNBD (120.00 ± 39.76; 134.96 ± 43.98; p < 0.609), CNFT (15.71 ± 2.55; 17.61 ± 4.59; p < 0.453) or CNFL (26.54 ± 5.43; 28.43 ± 4.90; p < 0.606) in stroke patients with silent infarcts < 10 vs ≥ 10. There was no significant difference in CNFD (30.18 ± 5.15; 30.08 ± 6.00; p < 0.973), CNBD (127.20 ± 28.08; 121.35 ± 45.78; p < 0.766), CNFT (20.36 ± 4.53; 15.15 ± 2.56; p < 0.051) or CNFL (28.91 ± 2.95; 25.50 ± 5.67; p < 0.144) in stroke patients with white matter ischemia compared to stroke patients without white matter ischemia.
Conclusion
Corneal confocal microscopy identifies greater corneal nerve fibre abnormalities in patients admitted with stroke, which is present in patients with and without dysglycemia. It may therefore reflect the consequence of vascular risk factors independent of glycemic status. However, the extent of corneal nerve fibre pathology does not differ in relation to the severity of neurological disability or extent of pathology on MRI. Larger, longitudinal follow up studies are required to determine the prognostic ability and utility of CCM as a surrogate imaging biomarker for stratifying patients at risk of stroke.
References
1. Petropoulos IN, Alam U, Fadavi H, Asghar O, Green P, Ponirakis G, et al. Corneal nerve loss detected with corneal confocal microscopy is symmetrical and related to the severity of diabetic polyneuropathy. Diabetes care. 2013;36(11):3646–51.
2. Petropoulos IN, Manzoor T, Morgan P, Fadavi H, Asghar O, Alam U, et al. Repeatability of in vivo corneal confocal microscopy to quantify corneal nerve morphology. Cornea. 2013;32(5):e83–e9.
3. Petropoulos IN, Alam U, Fadavi H, Marshall A, Asghar O, Dabbah MA, et al. Rapid automated diagnosis of diabetic peripheral neuropathy with in vivo corneal confocal microscopy. Investigative ophthalmology & visual science. 2014;55(4):2071–8.
4. Asghar O, Petropoulos IN, Alam U, Jones W, Jeziorska M, Marshall A, et al. Corneal confocal microscopy detects neuropathy in subjects with impaired glucose tolerance. Diabetes care. 2014;37(9):2643–6.
5. Tavakoli M, Kallinikos P, Iqbal A, Herbert A, Fadavi H, Efron N, et al. Corneal confocal microscopy detects improvement in corneal nerve morphology with an improvement in risk factors for diabetic neuropathy. Diabetic medicine: a journal of the British Diabetic Association. 2011;28(10):1261–7.
6. Azmi S, Ferdousi M, Petropoulos IN, Ponirakis G, Alam U, Fadavi H, et al. Corneal Confocal Microscopy Identifies Small-Fiber Neuropathy in Subjects With Impaired Glucose Tolerance Who Develop Type 2 Diabetes. Diabetes care. 2015;38(8):1502–8.
7. Tavakoli M, Ferdousi M, Petropoulos IN, Morris J, Pritchard N, Zhivov A, et al. Normative values for corneal nerve morphology assessed using corneal confocal microscopy: A multinational normative data set. Diabetes care. 2015;38(5):838–43.
8. Dabbah M, Graham J, Petropoulos I, Tavakoli M, Malik R. Automatic analysis of diabetic peripheral neuropathy using multi-scale quantitative morphology of nerve fibres in corneal confocal microscopy imaging. Medical image analysis. 2011;15(5):738–47.
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Roadside Observational Surveys of Restraint Use by Young Children in Qatar: Initial Results and Recommendations
More LessIntroduction
In a report by the WHO Eastern Mediterranean Region 1, the non-use of child restraints for children was identified as a key risk factor that can be addressed by the adoption and enforcement of legislation that will increase their use. Currently, there are no child restraint laws in Qatar. The objective of the study is to report baseline data on child restraint use and to provide evidence to inform the passage of child passenger restraint laws in Qatar.
Methodology
This roadside observational survey was conducted as part of the Young Kids in Safe Seats Project funded by the Qatar Foundation. Trained observers conducted roadside observations of passenger restraint use in vehicles with children, less than 5 years, at 12 sampling sites. Standard data was collected per observation: seating position, restraint used and appropriateness of restraint used.
Results
Of 2232 observations of young child passengers; 41% were properly restrained, 21% improperly restrained and 38% unrestrained, 10.9% were on an adult's lap. The most common seating location was right 2nd row followed by left 2nd row. These 2 locations also had the highest rates of proper restraint use. The positions with the lowest restraint use were the front and 2nd row middle seat. One in 9 children observed was illegally seated in the front row, most on the lap of an adult [38.3%] or unrestrained [34.4%].
Conclusions
This is the first observational study in Qatar that measures child restraint rates in children younger than 5. Less than half of these children are traveling safely. Priority areas for intervention include: enforcement of existent laws banning children in the front seat, education about the risks for children in an adult's lap and encouraging the proper use of age/size appropriate restraint systems. These findings can inform the development of national child passenger restraint laws.
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A Five-Year Time Trend Analysis of Road Traffic Injuries [Rtis] and Deaths among Infants and Toddlers in Qatar
More LessBackground
Road Traffic Injuries (RTIs) are the leading cause of death in Qatar1, but the epidemiology of these injuries in the infant (0–1 years) and toddler (2–4 years) [IAT] population has not been reported. This study aimed to document and analyze the epidemiology of RTIs in IATs of Qatar and make recommendations for targeted and age-specific recommendations to improve road safety for this population.
Methods
A retrospective analysis of data on child RTIs and RTI deaths admitted to the Hamad Medical Corporation [HMC] Trauma Center or Mortuary in Doha, Qatar, from 2008–2014, was conducted. Temporal trends in the nature of RTI's and RTI deaths, road user types and mortality rates were calculated and analyzed for the years that age-group population size was available.
Results
There were 189 severe RTIs and 15 RTI deaths during the study period. Males made up 80% of the injured and 60% of fatalities. The average age of the injured was 3 years and for fatalities was 2.8 years. Pedestrians [53%] and unrestrained passengers [43%] made up the majority of the injured. There have been steady declines in severe RTI and RTI death rates from 2008 to 2012 [25.9 to 22.2 RTIs per 100,000 and 0.9 to 4.0 RTI deaths per 100,000], but these rates are still two times higher than those for IAT in other high-income countries [HICs] like the United States and Germany2.
Conclusions
RTIs and RTI death rates in IAT in Qatar have been declining but proven programs for improved safety of child pedestrians and passengers must be implemented if it is to approximate those in other HICs. This includes programs around child restraint use and improving pedestrian environments and practices/supervision for IAT.
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High-Throughput Discovery of Cancer Cell Surface Interactions by Pairing cDNA Phage Display and Next Generation Sequencing
Authors: Simeon Andrews and Joel MalekDetermining the complement of binding partners for a given protein is one of the most common questions in the field of biochemistry. Understanding complex protein interaction networks enables predictions about putative drug targets and the effects of mutations. Among the many techniques used to study protein-protein interactions, cDNA phage display stands out as a relatively unbiased method of finding protein interaction partners. By inserting cDNA fragments into the phage genome, we can cause the phage to express these cDNA fragments as peptides on its surface, thus physically linking a protein fragment with the DNA that encodes it. Limited work has previously been done with cDNA-encoding phage libraries, mainly focused on very strong interactions.
Cell lines MDA-MB-231 and MCF-7, derived from human breast tumors, model more and less aggressive cancers, respectively. An understanding of their surface interactions could provide insight into the biology of aggressive cancers, and identify new targets for therapy.
Using phage cDNA libraries encoding millions of fragments from cDNA libraries, we have probed the surface of breast cancer cell lines. These cells were exposed to the phage cDNA libraries, followed by brief washing; this selects for the phage particles that bind selectively to the cells. Importantly, these gentle washes should permit the detection of low-energy interactions as well as higher affinity ones. The selected libraries can then be analyzed by next generation sequencing (NGS) technology. NGS permits the recording of tens of millions of cDNA sequences from each library. As a result, we can quantify the differences in the phage binding to aggressive versus non-aggressive cell lines. This allows us to discover cell surface markers of aggressiveness in cancer, and informs us of native cell surface interactions.
We have shown that phage display, paired with next generation sequencing, can provide quantitative information on the complement of proteins that bind to cancer cells. Two rounds of selection are sufficient to identify potential markers of cell phenotypes, or possible targets for future therapy. In our initial screening, we found hundreds of sequences that were specific to one cell line versus the other. Although these sequences are likely valid, we determined that the majority do not correspond to native protein sequences. This was due to the construction of the original (purchased) phage library. The insertion of the cDNA into the phage had been, of necessity, somewhat random, resulting in a large fraction of phages with cDNA sequences that were out of frame. Given that phages expressing truncated proteins have a growth advantage over phages expressing longer cDNAs, these truncated proteins rapidly overtook expanding libraries.
We have expanded this work by the creation of our own phage cDNA libraries. cDNA from the MCF-7 cell line was created, sheared, and inserted into a phage we generated. This new phage DNA encodes a biotin signal after the cDNA sequence. By using streptavidin beads to select for biotinylated phages, we can greatly increase the fraction of in-frame cDNAs in the phage pool. We have shown this selection is effective, while still leaving a diverse library. Selection of these frame-correct libraries has now revealed much more informative selections against mammalian cell surfaces. As an unbiased approach, cDNA phage display on cancer cells promises to uncover substantial new biology.
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Patient Counseling Practices among Community Pharmacists in Qatar
Authors: Bridget Javed, Nadir Kheir and Adil YousifBackground
Patient counseling is a term used in the field of pharmacy to describe the communication that takes place between a pharmacist and a patient in regards to his or her medication therapy. Patient counseling is deemed to be the professional responsibility of pharmacists. Patients require education on the proper use of medications to improve therapeutic outcomes and avoid treatment failure. 1 Pharmacists are in an excellent position to provide this type of education and counseling to patients, and are readily accessible to the public as a first point of contact for patients with medical inquiries. 2 Several studies have shown that counseling provided by pharmacists can prevent medication related problems, improve patient compliance with medications, and contribute to positive therapeutic outcomes. 3, 4 Patient counseling practices among Arab countries are not clearly identified in literature or mandated by governing authorities or agencies. The reason may be the low expectation by the public of the pharmacist who for so long had confined their role to filling and selling medications. Many studies have identified various aspects such as the busyness of the pharmacies and the education, age, and attitude of the pharmacists as barriers for the provision of counseling. 4 The assessment of these barriers in addition to patient characteristics will assist in further evaluating and understanding pharmacist's counseling practices in community pharmacies. Since patient counseling is an essential element of patient care, investigating the current state of patient counseling practices in Qatar is necessary. One of the methods that help to gain an accurate assessment of pharmacist's counseling practices is to observe pharmacists in their natural environment without prior knowledge to the minimize the Hawthorne effect. 5 Therefore, to lessen the potential Hawthorne effect (change in someone's behavior due to the knowledge that s/he is being observed), this research project will utilize simulated patients (also known as mystery shopper) to examine the counseling practices of community pharmacists in Qatar. The objectives of this research project are to evaluate the quality of patient counseling practices by community pharmacists in Qatar and to determine if an association exists between the content of patient counseling and the characteristics of community pharmacists, patients, and community pharmacies.
Methods
This is an observational cross sectional study to evaluate the community pharmacist's counseling practices in Qatar using simulated patients. Two patient scenarios were created to assess the counseling provided by the pharmacist to the patients with diabetes and asthma. Two simulated patients of Arab decent fluent in Arabic and two simulated patients of non-Arab decent fluent in English were recruited for this study. Each simulated patient was randomly assigned to either the diabetes or asthma scenario. Each simulated patient entered the community pharmacy and observed the number of customers to assess for busyness of the pharmacy. The simulated patient then asked to speak to the pharmacist and requested their assigned medication. Prompting questions were initiated by the patient after each pharmacist was provided with the opportunity to counseling the patient. The simulated patient then purchased the medication to authenticate the interaction and left the pharmacy. Immediately following the interaction, the simulated patient completed a form that assessed the pharmacist's counseling ability. Once completed, the simulated patient returned to the same the pharmacist to explain the purpose of the study. Consent was obtained from the pharmacist and a survey written in English or Arabic was administered only to those who provided consent. The written survey included questions related to pharmacist demographics (gender, age, native language, pharmacy degree received, country of pharmacy education, graduation year, and practice experience), pharmacist's perception on patient counseling (barriers and importance), and pharmacy characteristics (number of staff, availability of a counseling area, and busyness of the pharmacy).
Results
One hundred and twenty-nine pharmacists consented to participate in this study. The majority of pharmacists were young male pharmacists with at least 2 years of practice experience in Qatar. Most pharmacists have received their pharmacy degree from India and Egypt. Most of the community pharmacies had one pharmacist per shift and no private patient counseling area. In the diabetes scenario (n = 64), the male simulated patient received significantly better counseling from the pharmacist when compared to the female simulated patient. The pharmacist's knowledge regarding diabetes was considered poor with over 60% of pharmacists referring the patient to the physician. For the asthma scenario (n = 65), the male simulated patient received significantly better counseling from the pharmacist compared to the female simulated patients. Only 6% of the pharmacists were able to properly demonstrate the correct inhaler technique to patients. However, more than 50% of the pharmacists were are able educate the simulated patient on the role of the asthma medications. Overall, the pharmacist's gender, age, native language, pharmacy degree, country of pharmacy education, and years of practice experience did not seem to have an effect on the quality of counseling provided to patients. Better counseling was provided by the community pharmacists to the simulated patients when the pharmacy was not busy. Not having a private counseling area in the pharmacy was a significant barrier leading to lower counseling practices among community pharmacists. Some other barriers related to patient counseling identified by pharmacist include time, no access to patient medication records, and patients not interested in the counseling provided by the pharmacist.
Conclusion
The findings from this study suggest the current counseling practices among community pharmacists in Qatar is substandard. Development of continuing education programs for practicing pharmacists to enhance their communication skills and knowledge to improve counseling practices is strongly advocated. These educational programs will need to be tailored to meet the needs of the pharmacists to address the fundamental communication skills that each pharmacist should possess for practice. In addition, pharmacy laws and regulations need to be updated to meet the changes in the pharmacy profession from dispensing to a patient centered care focus. Community pharmacies need to be equipped with a counseling area, mandatory drug information resources, and the ability to maintain medication profiles for each patient. Pharmacy regulations should also consider mandating all pharmacists to provide counseling for each patient.
References
Resnik DB et al. The conflict between ethics and business in community pharmacy: what about patient counseling? Journal of Business Ethics 2000;28:179–186.
Taylor J. OTC counseling: review of pharmacist performance. Medscape Pharmacists [serial online] 2001 Aug [cited 2009 Dec 21]; 2(2). Available from URL: http://www.medscape.com.
American Society of Health-System Pharmacists. ASHP guidelines on pharmacist-conducted patient education and counseling. Am J Hosp Phar 1997;54:431–4.
Svarstad BL, Bultman DC, Mount JK. Patient counseling provided in community pharmacies: Effects of state regulation, pharmacist age, and busyness. J Am Pharm Assoc 2004;44:22–29.
Puspitasari HP, et al. A review of counseling practices on prescription medicines in community pharmacies. Res Soc Admin Pharm 2009;5:197–210.
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Genotype and Phenotype Correlation of Breast Cancer in BRCA Carriers and Non-Carriers
Authors: Hekmet Bugrein and Salha Mohammed BujassoumBreast cancer is both genetically and histopathologically heterogeneous disease, the biological basis for this heterogeneity is unknown, although there are some distinct phenotype-genotype correlations. Approximately 5% to 10% of breast cancer is hereditary and BRCA1 and BRCA2 genes are responsible for the majority of hereditary breast cancers. BRCA1 and BRCA2 mutant cells have defects in the DNA repair and chromosomal instability with marked defects in cell division [9]. In the literatures BRCA1 and BRCA2 associated breast cancers have different clinical, histological, immune-phenotypic features [6]. To validate the effect of BRCA 1 or BRCA 2 germ line mutation on breast cancer aggressiveness and on the clinical features, we analyzed, correlate the genotype, and compared histological and molecular status and clinical variables of 31 breast cancer patients with BRCA gene mutations carriers and histopathological and molecular characters of breast cancer in 50 patients affected in the same age group but with no pathogenic mutations or variants of unknown significant (VUS) in either BRCA1 or BRCA2 genes. This is a retrospective study and involved cases assessed on the hereditary breast and ovarian cancer clinic between 2013–2015 at the National Center of Cancer Care and Research (NCCCR) in the State of Qatar.
Methods
A retrospective review of medical records was conducted to determine the clinical characteristics, the molecular results of BRCA testing and the tumor characteristics from the histopathology reports in addition to a new review of the tumor blocks. All of the cases were evaluated at the high risk hereditary breast and ovarian cancer clinic at the national center of cancer care and research (NCCCR) in state of Qatar between 2013–2015.
Results
(81) patients with breast cancers were diagnosed at ages 50 year and below, (50) patients were BRCA negative, and (31) patients were BRCA positive, (21) were BRCA1 mutation carriers, (8) patients were BRCA2 mutation carriers and (2) carried mutations in both BRCA1 and BRCA2 genes. On BRCA1,2 gene sequencing and MLPA the most detected mutation in BRCA gene is small frame shift deletion or insertion in one or more Exons, and protein truncation. In this study age group carriers and non-carriers are young (50 and below) but BRCA mutation detected with higher incidence in younger ages, Histopathology of invasive ductal carcinoma (IDC) was detected in (93.5%) of BRCA gene mutation carriers with (74%) high nuclear grade 3, and a higher proliferative rate were detected in non carriers control group nuclear grade 3 in 36% of cases and high proliferative rate in 31%. Triple negative (48.6%), Triple positive (16%), ER PR positive. Her 2 negative (26%) and ER PR negative Her 2 positive (9.6%) in BRCA carriers. In non carriers TN in 17%, triple positive 13%, ER PR positive Her 2 negative 44%, ER PR negative Her 2 positive 13%.
Conclusion
These results suggest that tumors associated with BRCA mutations are more likely to be basal sub type, has more aggressive behavior (invasive, grade 3, Triple negative) affect younger age group, patient presented in more advanced stage further analysis needed to determined clinical outcomes in BRCA positive compare to control, in regards to local and systemic relapse, overall survival. however will continue to build up our data base for better characterization of our hereditary breast cancer cases at clinical and molecular level and use this information for future development of targeted anti-cancer agents use.
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Prospective Study of Incidence and Predictors of Peripheral IV Catheter–Induced Complications
Authors: Mostafa Abolfotouh, Mahmoud Salam, Ala'a Bani Mustafa, David White and Hanan BalkhyBackground
Peripheral intravenous catheters (PIVs) are invasive catheters that may endure risks of clinical complications affecting health care outcomes and patient satisfaction. Patients requiring frequent PIV insertions due to an extended length of stay of one week or more would undergo multiple PIV pricks during their course of hospitalization. The combined factors of multiple PIV insertions and extended hospital stay make chronic patients especially at a higher risk for phlebitis and subsequently infection No studies in the literature review discussed the phlebitis rates and risks when toxic medications were infused using a peripheral catheter. The aim of this study was to determine the pattern and incidence of PIV complications among patients admitted to a tertiary care military health care facility in central region of Kingdom of Saudi Arabia. This was achieved through the following objectives: (1) Estimation of the cumulative incidence and incidence density for major PIV complications (catheter occlusion, dislodgment, infiltration, and phlebitis) during a period of 1 month, (2) Identification of significant risk factors for PIV complications such as patient related characteristics (gender, age, co-morbidities) or catheter related characteristics (catheter size, dressing, site of insertion, type of infusion, dwell times), and (3) Determination of the time line for the occurrence of various PIV complications.
Methods
An observational prospective cohort study investigated PIV pattern and complications among 359 adults with 842 PIV catheters, admitted to various wards at KAMC with a total of 2505 catheter days. Data on patient characteristics (age, gender, and health complaints) and PIV characteristics (Catheter size, duration, insertion site, nature of PIV infusate, and type of dressing) was collected. PIV catheters-related clinical outcomes (Pain, Phlebitis, leaking and others) were recorded on 12–hour intervals, using the Visual Inspection Phlebitis (VIP) scale. Phlebitis was defined as the presence of two or more signs of pain, tenderness, warmth, erythema, swelling, or a palpable cord, with or without purulent drainage from the catheter insertion site. Infusion Phlebitis scale can range from (0), indicating no symptoms of phlebitis, to (5), with signs of purulent drainage, redness, and a palpable cord greater than 3 inches. Infiltration was defined as permeation of intravenous fluid into the interstitial compartment, causing swelling of the tissue around the site of the catheter. All PIV catheters were changed for a score of 2 or more, determined by the presence of a cold/warmth skin region around the insertion site, pain, redness, and/or edema extending from 1 to 2 inches above the PIV site. Incidence density (DI) and cumulative incidence (CI) of complications were calculated. Regression analyses were applied to determine the significant predictors of complications. Significance limits were set at P < 0.05.
Results
One half of all patients were 65 years and above, with no significant sex difference. The majority of patients (76.88%) had medical chief admission complaints, whereas (51.53%) were admitted in cardiac wards. Complicated catheters were found in 141(39.3%) patients, with 273 complications (32.4/100 catheters), 190 complicated catheters (CI = 22.56/100 catheters & DI = 75.84/1000 catheter days). Phlebitis ranked first among complications, with a CI of (17.58%), followed by pain (7.60%), leaking (3.92%) and dislodgement (2.38%), and extravasations and occlusion (0.48% each). When the analysis was based on failure per 1000 device days, and after adjusting for all possible confounders, female gender remained as a significant predictor of higher incidence of overall complications (p = 0.00001), phlebitis (p = 0.000003) as well as other complications (p = 0.0.0003). Insertion in fore/upper arm was a significant predictor of both phlebitis (0.024) and other complications (0.049), while medical infusion was a significant predictor of phlebitis (0.02) and overall complications (0.006).
Conclusion
Incidence of complications in this study is comparable with figures in previous studies, however, better insertion techniques may be sought to lower the incidences of PIV complications, thus extending their onset beyond day 3. Changing catheters is recommended when clinically indicated rather than routinely post 72 hours of insertion which in return minimizes the frequency of insertions per patient and subsequently complications.
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A New Monte Carlo Tools to Simulate PET Scanner based on FLUKA
More LessPositron Emission Tomography system is a functional medical imaging technique providing 3D images of the living processes inside the body relying on isotopes. These systems are used to study animal models of human disease. It has been found that significant benefits in spatial resolution, sensitivity, image quality, and quantification were achievable using preclinical systems. The physics of PET systems is based on the detection in coincidence of the two 511-keV rays, produced by an electron-positron annihilation, and emitted in opposite directions, as dictated by the conservation of energy and momentum. The radioactive nuclei used as sources of emission of positrons for PET systems are mainly 11C, 13N, 15O, and 18F, which are produced in cyclotrons and decay with half-lives of 20.3 min, 9.97 min, 124 sec, and 110 min, respectively. These radio-nuclides can be incorporated in a wide variety of radiopharmaceuticals that are inhaled or injected, leading to a medical diagnosis based on images obtained from a PET system. Traditionally, Monte Carlo codes (MC) are powerful tools for the research and development of new scanners and advanced image reconstruction algorithms. Among the benefits from extensive use of MC simulations we can highlight the design of new PET scanners, the development and assessment of image reconstruction algorithms and other applications, such as the Effect of inter-crystal scatter on estimation methods for random coincidences and image reconstruction algorithms assessment. Simulations make it feasible not only to refine the design parameters of PET scanners, but they also help to identify obstacles concerning count rate, resolution, sensitivity, etc. There are different Monte Carlo codes that simulate the transport of radiation through matter, such as FLUKA, GEANT4, MCNP, EGS4 and PENELOPE. All of them have been widely employed in the field of nuclear imaging and internal dosimetry. In this work we present and validate a new PET-dedicated Monte Carlo tool. This tools is based on FLUKA and implemented on FLAIR the GUI of FLUKA. FLUKA is a multi-purpose particle physics code for calculations of particle transport and interaction with matter. It is used in a wide range of applications in high energy experimental physics and engineering including accelerator driven systems, shielding, detector or target design, neutrino physics, dosimetry, activation and medical physics etc. this tools is an easy-to-use application which allows comprehensive simulations of PET systems within FLUKA. The developed tools include a PET scanner geometry builder and a dedicated scoring routine for coincident event determination. The geometry builder allows the efficient construction of PET scanners with nearly arbitrary parameters. We also present recent medically-oriented developments for Flair, which allows to import DICOM files and convert them into FLUKA voxel geometry or into a density map of radioactive isotopes, which could be employed as source in a convenient way. The coincidence events from the scoring can be saved in standard output formats, including list mode and binary sinogram. Such coincidence events can be further 2D- or 3D-reconstructed using Filtered back-projection (FBP) or Maximum Likelihood Expectation Maximization (MLEM) algorithms. In the MLEM method, the user can specify the size of the voxel as well as the size of the reconstructed image. Another source of flexibility is the possibility of adding new functionalities: a user can write a Python, C++ and FORTRAN routine and add it to Flair. This paper describes the PET tools and shows the results of extensive validations and comparisons of simulations against real measurements from commercial acquisition systems.
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Predicting Potential Functional Modules in Biological Networks Through Context-Sensitive Random Walk Based Network Querying
Authors: Byung-Jun Yoon and Hyundoo JeongNetwork querying algorithms provide computational means to identify conserved network modules in large-scale biological networks that are similar to known functional modules, such as pathways or molecular complexes. Two main challenges for network querying algorithms are the high computational complexity of detecting potential isomorphisms between graphs and ensuring the biological significance of the query results. In this work, we propose a novel network querying algorithm that can enhance the biological significance of the query results through the use of a context-sensitive random walk (CSRW) model. In order to identify conserved subnetwork regions in the target network that are similar to a given query network, the algorithm estimates the node correspondence between the query and the target networks based on the CSRW model. Inspired by the pair hidden Markov model (pair-HMM) that has been widely used in comparative sequence analysis, the CSRW model can effectively capture the similarities between graphs by explicitly accounting for potentially inserted and deleted network nodes. Based on the estimated CSRW node correspondence scores, our algorithm first identifies high-scoring regions (referred to as the seed networks) in the target network that bear considerable similarity with (part of) the query. The seed networks are further extended by maximally minimizing the network conductance, which can effectively identify nearby nodes (e.g., proteins) that may share similar functions with other nodes in the current seed. Finally, the query result is pruned by removing irrelevant nodes based on an extension reward score, thereby improving the consistency of the final query result. Through extensive numerical simulations based on 938 real biological complexes, we show that our proposed algorithm yields accurate query results with enhanced biological significance.
References
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Sharan, R., Suthram, S., Kelley, R.M., Kuhn, T., McCuine, S., Uetz, P., Sittler, T., Karp, R.M., Ideker, T.: Conserved patterns of protein interaction in multiple species. Proc. Natl. Acad. Sci. USA 102, 1974–1979 (2005).
Yoon, B.-J., Qian, X. and Sahraeian, S.M.E.: Comparative analysis of biological networks: Hidden Markov model and Markov chain-based approach. IEEE Signal Processing Magazine 29, 22–34 (2012).
Girvan, M., Newman, M.E.J.: Community structure in social and biological networks. Proc. Natl. Acad. Sci. USA 99, 7821–7826 (2002).
Newman, M.E.J.: Finding community structure in networks using the eigenvectors of matrices. Phys. Rev. E 74, 036104 (2006).
Spirin, V., Mirny. L.A.: Protein complexes and functional modules in molecular networks. Proc. Natl. Acad. Sci. USA 100, 12123–12128 (2003).
Sharan, R., Ulitsky, I., Shamir, R.: Network-based prediction of protein function. Mol. Syst. Biol. 3, 88 (2007).
Cook, S.A.: The complexity of theorem-proving procedures. Proceedings of the third annual ACM sym- posium on theory of computing, pp 151–158 (1971).
Jeong, H., Yoon, B.-J.: Effective Estimation of node-to-node correspondence between different graphs. IEEE Signal Processing Letters 22, 661–665 (2015).
Jeong, H., Yoon,B.-J.: Accurate multiple network alignment through context-sensitive random walk. BMC Systems Biology 9, S7 (2015).
Kelley, B.P., Yuan, B., Lewitter, F., Sharan, R., Stockwell, B.R., Ideker, T.: Path BLAST: a tool for alignment of protein interaction networks. Nucleic Acids Res. 32, W83–W88 (2004).
Shlomi, T., Segal, D., Ruppin, E., Sharan, R.: QPath: a method for querying pathways in a protein- protein interaction network. BMC Bioinformatics 7, 199 (2006).
Dost, B., Shlomi, T., Gupta, N., Ruppin, E., Bafna, V., Sharan, R.: QNet: a tool for querying protein interaction networks. J. Comput. Biol. 15, 913–925 (2008).
Bruckner, S., Hffner, F., Karp, R.M., Shamir, R., Sharan, R.: TORQUE: topology-free querying of protein interaction networks. Nucleic Acids Res. 37, W106–W108 (2009).
Bruckner, S., Hffner, F., Karp, R.M., Shamir, R., Sharan, R.: Topology-free querying of protein inter- action networks. J. Comput. Biol. 17, 237–252 (2010).
Sahraeian, S.M.E., Yoon, B.-J.: RESQUE: Network reduction using semi-Markov random walk scores for efficient querying of biological networks. Bioinformatics 28, 2129–2136 (2012).
Huang, Q., Wu, L.Y., Zhang, X.S.: An efficient network querying method based on conditional random fields. Bioinformatics 27, 3173–3178 (2011).
Huang, Q., Wu, L.Y., Zhang, X.S.: Corbi: a new R package for biological network alignment and querying. BMC Systems Biology 7, S6 (2013).
El-Kebir, M., Brandt, B.W., Heringa, J., Klau, G.W.: Natalie Q: A web server for protein-protein inter- action network querying. BMC Systems Biology 8, 40 (2014).
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Hashemifar, S., Jinbo, X.: HubAlign: an accurate and efficient method for global alignment of protein- protein interaction networks. Bioinformatics 30, i438–i444 (2014).
Hu, J., Knut, R.: LocalAli: an evolutionary-based local alignment approach to identify functionally conserved modules in multiple networks. Bioinformatics 31, 363–372 (2015).
Hakes, L., Pinney, J.W., Robertson, D.L., Lovell, S.C.: Protein-protein interaction networks and biology– what's the connection? Nat. Biotechnol. 26, 69–72 (2008).
Kuchaiev, O., Raajski, M., Higham, D.J., Prulj, N.: Geometric de-noising of protein-protein interaction networks. PLoS Comput. Biol. 5, e1000454 (2009).
Sahraeian, S.M.E., Yoon, B.-J.: SMETANA: accurate and scalable algorithm for probabilistic alignment of large-scale biological networks. PLoS One 8, e67995 (2013).
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Qatar Birth Cohort: Prevention Program of Risk Factors for Reproductive Health, Pregnancy and Child Health- A “Crossomics” Study
Authors: Eman T Sadoun, Eleni Fthenou, Manolis Kogevinas and Faleh Mohamed AliBackground
Qatar demonstrated high incidence of low birth weight (8.8%), preterm deliveries (8.5%), and stillbirths rate (6.85) (Rahman et all, 2013). In addition, Qatari pregnant women are 1.2 times more likely to have a low birth weight newborn compared to other Arab women, where Gestational Diabetes (13.4%–20.8%) and Gestational Hypertension (15.2%–21.6%) were the leading maternal complications observed.). The WHO Qatar STEPS survey (2012) on chronic disease risk factors reported that 42.5% of the women in reproductive age have high risk factor for developing chronic diseases, while 68% are overweight with high blood pressure, elevated total cholesterol levels and fasting glucose. In addition to these data, the International Association of the study of Obesity has ranked Qatar sixth globally for prevalence of obesity.
Methods/Design
This is a prospective five year cohort study developed by SCH. Pregnant women (n = 2500) and offspring will be, respectively, recruited during certain critical periods of fetal development and the first years of life. The genetic, environmental exposures and potential human health risks (including cancer, immune, metabolic and cardiovascular diseases, neurodevelopmental abnormalities, asthma, and birth outcomes) will be investigated via specific questionnaires and collection of biological samples. The study comprises an extensive range of “omics” analyses for the in-depth investigation of the impact of the genome-exposome synergy in the establishment of adverse birth outcomes and early childhood diseases. This is a multidisciplinary study where SCH is collaborating with various research institutions such as PHCC, QU, WCMC-Q, QBRI, QBB, QEERI, TAMU-Q, Sidra, and HMC.
Discussion
Human epidemiological studies and animal research data propose a concept of fetal developmental programming whereby intrauterine environment is believed to trigger adaptations preparing the fetus in a particular range of environments. In this context intrauterine exposures have been referred to as the “fourth factor” in the causation of human disease. Consequently, the design of birth-cohort study is crucial for investigating the complex multidimensional molecular mechanisms associated with genetic, environmental and socioeconomic determinants, and their contribution to the development of chronic diseases and birth defects. This first birth-cohort in the state of Qatar has been launched by SCH with the main objective of evaluating the association of these exposures with the fetal development, reproductive outcomes, endocrine related outcomes, neurodevelopment, and obesity and with the occurrence of chronic diseases including asthma and allergies, metabolic syndrome and endocrine disorders that appear first in childhood but may perpetuate to future health problems. The main outcome of this multi-disciplinary project is to address the national concern of low reproductive health. The identification and quantification of the gene-environmental interaction affecting fetal growth and child health, shall provide evidence-based data to assist policy makers at SCH to develop better primary prevention programs and evidence based healthcare policies concerning Maternal Health, Reproductive Health, Pregnancy and Child Health in Qatar.
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Spatial Covariate Adjusted Survival Rates for Middle East Respiratory Syndrome (Mers) Coronavirus in the Arabian Peninsula
More LessIntroduction
The frequent outbreaks of novel or emerging infectious diseases are alarming. There is a need for urgent and appropriate intervention that can be adapted quickly for such diseases. Middle East respiratory syndrome coronavirus (MERS-CoV) previously known as novel CoV is a viral infection that causes severe acute respiratory illness. MERS-CoV is a respiratory pathogen and contagious that is contracted via close contact with infected subject. It appears to have been transmitted from camels to humans, recent studies have revealed an association among the virus found in humans and that found in camels (Drosten, et al., 2014). The epidemic that started in 2012 in the Kingdom of Saudi Arabia has spread to many countries, mostly in the Middle East and North Africa, and more recently South Korea. The new epidemic started when the virus crossed from an infected individual who had recently traveled to the Middle East and subsequently began spreading between people via direct contact while in some cases the infection crossed from animal to human. This has exposed the general populace and especially the healthcare workers to greater risk. Similar to the reaction during other infection outbreaks, such as SARS and Ebola virus, many countries have issued travel restrictions and advisories to the affected countries because of fear of international spread of the disease. The rate at which the outbreak is evolving cannot be overemphasized and the geographical extension of its spread is widening. Neighborhoods constitute a key determinant of socioeconomic disparities and health habits, and therefore there is a high risk that people at geographical proximity to the infection are particularly vulnerable. Additionally, people with preexisting chronic medical conditions are more prone to being infected by the illness or developing a severe case resulting in fatality (Assiri, et al., 2013). Strong links between healthcare facilities and the outbreak of the disease has been found in Jeddah, where the majority of patients were in contact with other patients or health care facilities (Oboho, et al., 2015). Elsewhere, the transmission of MERS-CoV in household contacts revealed that an outcome of approximately 5% as the rate of secondary transmission occurred at home (Assiri, et al., 2013). In spite of the many research conducted on MERS-CoV, very few have investigated the effect of ecological factors on the transmission of the disease. Moreover, very little is known on the possibility of airborne transmission of the virus and discussion is still on going on this issue. Airborne transmission of the pathogen may also occur through dust and movement of people, equipment and animals within infected countries which may contribute to the spread of the virus. Additionally, the effect of alternating temperature highs and lows may imply seasonality that could alter the transmission and survivability of the virus. Objectives During infectious disease outbreaks, transmission of disease may form networks of infected individuals because of the way virus crossed from infected individual to susceptible individual. See figure 1a for a subset of the infection network for MERS disease used in this study. The infected individuals may form network of individuals connected by source of infection (contact) as direct or indirection connection. The study intends to (1) explore and investigate the relationship between the intensity of the disease in a given region and environmental variables, (2) We sought to evaluate the risk factors of and trends in mortality as a result of MERS-CoV infection in a large cohort of patients between June 6, 2012 and May 19, 2015. Use covariate adjustment to correctly assess the disease-risk factor associated with the survival outcome, (3) It also aims to understand the dynamic pattern of the disease over different temporal and spatial scales. A functional spatial time series method of estimating the death rate in the outbreaks will be formulated. Spatial time series analysis of disease outbreaks are versatile tools for studying and understanding transmission and spread of a disease and may be useful in the different frontiers of its upsurge and in the possibility of its containment or eradication. And lastly, (3) a flexible dependence model that reflect the relationship among infected individuals in the same network.
Figure 1: (Top) Network for subset of the MERS data. The numbers represent the identification number of the patient while the arrow represents the infection direction. (Bottom) Showing the patients that were infected by patient 27.
Figure 2: Number of patients infected by each main contact (patient ID). Preliminary Exploratory Analysis This study is based on a retrospective analysis of the Middle East respiratory syndrome coronavirus (MERS-CoV) outbreak in the Arabian Peninsula between June 6, 2012 and May 19, 2015.
Table 1 presents the summary of data used in this study. Of the 958 cases recorded during the study period more than 90% (866) of the disease incidence occurred in the Kingdom of Saudi Arabia while Kuwait has the least incidence of 3. Seventeen percent of those infected with MERS disease were heath care worker. The fatality for the disease is about 0.35 among the total population. The mean age of the infected persons was 50.22 ± 18.37 years, with large percentage (55%) reported that they had some kind of comorbidity. Spatial analyses of disease outbreaks are versatile tools for studying and understanding transmission and spread of a disease.
Figure 3 shows the spread of MERS disease across the Arabian Peninsula within the study period. Majority of the disease incidence occurred in KSA and closed countries.
Table 1. Summary of the MERS data Country No. of Patients No. of Male/female No. with comorbidity Age at incidence % of HCW % fatal Mean/median mean SD KSA 866 565/284 469 49.66/50 49.66 ± 18.54 153 302 UAE 70 50/18 49 54/56 54 ± 15.33 9 30 Qatar 12 9/3 5 59.1/58 59.1 ± 15.99 1 3 Kuwait 3 1/2 3 54/43 54 ± 27.22 0 1 Oman 7 7/0 2 56.28/60 56.28 ± 17.54 1 3 Total 958 632/307 528 50.22/50.5 50.22 ± 18.37 164 339
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Eeg Profile & Yield in Evaluation of First Non-Febrile Seizures in Children-First Observational Study in Qatar
More LessIntroduction
Seizures are among the most common neurological disorders in the pediatric age group. Up to 10% of children might experience at least one episode suggestive of seizure activity in their life. It is thought that 5% of all medical attendances to emergency department are related to seizures. Whether the first non-febrile seizure is the kick start of long term epilepsy is always a question that physicians & families encounter. Ordering Electroencephalogram (EEG) for children with first non-febrile seizure is a subject of continuous debate.
Objectives
To collect demographic background data for children (1 month to 14 years) who presented with the first non-febrile seizure, To determine the prevalence & pattern of EEG abnormalities in Children (1 month to 14 years) with first non-febrile seizure, To estimate the possible yield of EEG in first non-febrile seizure as possible predictor of seizure recurrence or future epilepsy, and To collect possible evidence sufficient to make a recommendation for the use versus abandoning use of routine EEG in children with first episode of non-febrile seizure.
Methods
In a retrospective observational study around (400) children who were admitted with first non-febrile seizure to the Pediatric Emergency Centers (PECs) and their seizure were defined using the international league against epilepsy (ILAE) between January 2012 to December 2013 were studied. EEG was requested for 76 patients. Their EEG were reviewed and interpreted by pediatric neurology consultants. Patients’ demographic data and EEG records are then analyzed.
Results & Conclusion
Epileptic seizure should be diagnosed clinically and EEG is just a helpful tool. Utility of EEG is debatable in childhood first non-febrile seizure. EEG is helpful but interpretation should be individualized. EEG alone is not very good predictors of seizure recurrence or overall prognosis. Larger scale studies with longer follow up are needed.
Learning points
This is the first epidemiological study in Qatar in regard to children with epilepsy. It has given almost matching results in regard to background factors & yield of diagnosis in this small country with unique population constituents. This study however has formed the first step towards establishing pediatric epilepsy database project in Qatar. Recruiting of more patients & follow up studies are the future visions of this study.
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Nuclear Positioning is Important for the Survival of Mechanically Active Sensory Cells in the Cochlea
Authors: Henning Horn, Brian Burke and Colin StewartHearing loss is a common sensory deficit that can affect all levels of society. The two age groups where hearing loss is most likely to be identified is in newborns and in the elderly. Newborn screens have been very effective in finding individuals affected by hearing loss. The general hearing loss incidence in newborns is 0.2%, with roughly 50% of all cases being hereditary. A recent study in Qatar found that the incidence of hearing loss in newborns was as high as 5.2% 1, 25 times higher than the general global incidence. Much of this increase can be attributed to hereditary forms of hearing loss, as the rate of consanguinity in Qatar is high 1,2. The elderly are the other population group where hearing loss is often identified. Globally, the hearing loss incidence for people over 50 is around 40%, with men showing a higher incidence than women 3,4. In Qatar, 66% of the Qatari population over the age of 50 suffers hearing loss, compared to ∼35% for the non-Qatari populations 5. The gender distribution of hearing loss within the Qatari population is also different from the global trend, with the incidence being 75% for women and 59% percent for men5. Therefore, the incidence of hearing loss is dramatically higher in the Qatari population than it is globally, and presents an important health issue that should be addressed. We have previously shown that the outer nuclear membrane protein Nesprin 4 is essential for hearing in humans and in mice. Nesprin 4 is expressed in the sensory outer hair cells (OHCs) of the cochlea and is important for the proper nuclear positioning and survival of these cells. In the absence of functional Nesprin 4, the nuclei are apically mispositioned and the OHCs die. OHCs act as cochlear amplifiers, augmenting sound signals by up to 100-fold6. This amplification is achieved, at least in part, through electromotility, a somatic cell motility that causes cell length changes in response to depolarization or hyperpolarization of the cell. Electromotility is mediated by SLC26A5/prestin, a membrane protein enriched in the lateral membranes of OHCs7. Prestin-mediated electromotility develops postnatally in mice, with full activity occurring at 12–14 days after birth. We observed that the majority of OHCs in mice lacking Nesprin 4 die around this time and predicted that the mislocalized nucleus was incompatible with electromotility. To test this hypothesis we generated double-null mice for Nesprin 4 and prestin and examined the fate of OHCs in these animals. We found that loss of prestin rescues the loss of OHCs in Nesprin 4-null animals, indicating that while a mispositioned nucleus is incompatible with electromotility, it does not affect cell viability independent of mechanical stress. Others have previously shown that animals heterozygous for the prestin allele exhibit a reduced electromotility. We predicted that a reduction in electromotility should yield a partial rescue of OHCs in Nesprin 4-null animals. When we examine the Nesprin 4-null/prestin heterozygous animals, we did indeed observe a partial rescue of OHCs. Together, these results indicate that proper nuclear positioning mediated by Nesprin 4 in OHCs is essential for these cells to survive the mechanical stress of electromotility.
References
1. Bener, A., EIHakeem, A. A. M. & Abdulhadi, K. Is there any association between consanguinity and hearing loss. Int J Pediatr Otorhinolaryngol 69, 327–333 (2005).
2. Girotto, G. et al. Consanguinity and Hereditary Hearing Loss in Qatar. Hum Hered 77, 175–182 (2014).
3. Roberts, A. Sensorineural Hearing Loss. Synopsis of Causation, Ministry of Defence 1–30 (2008).
4. Action on Hearing Loss. at < http://www.actiononhearingloss.org.uk/your-hearing/about-deafness-and-hearing-loss/statistics.aspx>
5. Bener, A., Salahaldin, A. H., Darwish, S. M., Al-Hamaq, A. & Gansan, L. Association between hearing loss and type 2 diabetes mellitus in elderly people in a newly developed society. Biomed Res 19, 187–195 (2008).
6. Liberman, M. C. et al. Prestin is required for electromotility of the outer hair cell and for the cochlear amplifier. Nature 419, 300–304 (2002).
7. Dallos, P. & Fakler, B. PRESTIN, A NEW TYPE OF MOTOR PROTEIN. Nat Rev Mol Cell Biol 3, 104–111 (2002).
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Down-Regulation of Erk and Sirt1 Signaling May Lead to Reduced Fgf-21 Sensitivity in a Mouse Model of Diabetes
Authors: Yasser Majeed, Rohit Upadhyay, Arun Lakshmanan, Christopher Triggle and Hong DingIntroduction
Fibroblast Growth Factor 21 (FGF-21) belongs to the FGF family of growth factors. FGF-21 regulates various aspects of glucose and lipid metabolism and is anti-diabetic. For example, FGF-21 administration or transgenic overexpression alleviates hyperglycemia and hyperlipidemia in obese mice, reduces body weight, and protects against fatty liver disease. FGF-21 signals via the FGF receptors and signaling also requires an accessory protein called β-klotho. Downstream FGF-21 effectors include ERK and Sirt1. FGF-21 is primarily secreted by adipocytes and hepatocytes and its expression is increased by agonists of PPARα (e.g. fenofibrate) and AMPK (e.g. metformin). Here, we used a mouse model of diabetes and investigated changes in FGF-21 and related signaling proteins in liver and adipose tissue. The role of microRNAs as potential regulators of FGF-21 signaling was also assessed.
Methods
WT or leptin receptor mutant (db/db) mice were used in this study. Mice were identified by genotyping and blood glucose levels were monitored (to confirm hyperglycemia in db/db mice). All animal experiments were performed using an IACUC-approved protocol. Mice were euthanized and liver and perivascular adipose tissue were collected and snap-frozen for later analysis. Blood was collected from anesthetized mice. Western blotting and quantitative PCR were performed using standard protocols. Data were analyzed using GraphPad software and t-tests and ANOVA analysis were used for statistical comparisons.
Results
WT and leptin receptor mutant (db/db) mice were treated with metformin (100 mg/kg/day) for 6–8 weeks. Western blot experiments in liver lysates revealed that metformin treatment significantly increased FGF-21 protein expression in WT mice. However, metformin failed to elevate FGF-21 in db/db mice. Metformin also significantly increased the expression of β-klotho protein in the liver of WT mice, but not in db/db mice. There was also an increase in FGF-21 and β-klotho gene expression after metformin treatment in WT mice, but not in db/db mice. ERK and Sirt1 are downstream molecules required for FGF-21 signaling. Experiments revealed that there was a significant decrease in ERK phosphorylation in db/db liver. Metformin treatment of WT as well as db/db mice also further reduced ERK phosphorylation in liver. Expression of Sirt1 protein was also reduced in db/db liver and further decrease was observed after metformin treatment. To investigate mechanisms involved in down-regulation of ERK and Sirt1, experiments were focused on microRNA 34a (miR34a), which is known to regulate both ERK and Sirt1 expression. A significant increase in circulating plasma miR34a was observed in db/db mice. Short treatment with metformin (1–3 days) produced a further increase (>10-fold) in circulating plasma miR34a in db/db mice. To identify the tissue source for miR34a synthesis and release into circulation, experiments were performed in perivascular adipose tissue (PVAT). Experiments revealed a significant increase in miR34a, but no further increase after metformin treatment in PVAT from db/db mice, suggesting that PVAT was not a likely source for miR34a release.
Conclusions
The data suggest up-regulation of FGF-21 and β-klotho in livers of db/db mice but a concomitant reduction in its downstream effectors, ERK and Sirt1. This may lead to compromised FGF-21 sensitivity in diabetes. Down-regulation of ERK and Sirt1 may result from elevated circulating miR34a levels.
Acknowledgements
The project was funded by NPRP grants (6-428-3-113 and 5-149-3-040) from QNRF.
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Comparison of Aortic Arch Branching Patterns between Bicuspid and Tricuspid Aortic Valve Patients in Qatar
Authors: Cornelia S Carr, Nazar Mohammed, Lama Shuayb, Maryam Alkuwari and Abdulaziz M AlkhulaifiThe aortic arch and its branches form during the third week of embryogenesis, which involves a complex process. Abnormalities of the arch branching pattern arise by persistence of segments of arches that normally disappear or the disappearance of segments of arches that normally remain, or both [1]. The most common human aortic arch branching pattern has the innominate artery, the left common carotid artery and the left subclavian artery all as separate branches (Fig. 1). The most common variant branching pattern involves the left common carotid artery arising in a common origin with the innominate artery (Fig. 2), and the next most common the similar left common carotid artery originating from the innominate artery itself (Fig. 3). A true bovine arch involves a single common brachiocephalic trunk arising from the arch which then splits into the right subclavian artery, a bicarotid trunk and a left subclavian artery (Fig. 4), and is actually extremely uncommon in humans [2]. Originally the variations of the arch branching patterns were made by post-mortem studies [3], but, more recently large imaging studies have been performed [4,5] confirming that approximately 70% of people have a normal branching pattern with 20% having a common origin of the innominate artery and left common carotid artery (as in Fig. 2) [4,5], but these studies were performed without reference to the anatomy of the aortic valve (bicuspid versus tricuspid). Bicuspid aortic valve (BAV) is the commonest congenital cardiac malformation with 1–2% of the population being affected [6], and is associated with other cardiac anomalies, especially coarctation [6]. BAV is also associated with dilatation of the ascending aorta which is thought to be related to intrinsic pathological properties of the aortic wall and altered flow dynamics through the abnormal valve [7,8], with increased risk of aortic dissection compared to tricuspid aortic valve (TAV) patients [9,10]. As BAV is a common congenital anomaly and the variants of the aortic branching pattern are developmental in origin we decided to see if the frequency of arch variants in BAV and TAV patients differed, as this has not previously been looked at. We examined Computerised Tomographic aortograms (CT) and echocardiograms of BAV and TAV patients to assess the aortic arch branching pattern and any possible association with the valve morphology.
Materials and Methods
An established BAV patient database at the Heart Hospital, Doha, Qatar was used to retrieve patients. All BAV patients with CT scans of the aorta were examined. During the same period (September 2011–2014) 200 CT aortograms were performed in the Radiology department of the Heart Hospital and from these TAV patients were selected for comparison. Basic demographic data were collected for all the patients. This study was approved by the Institutional Review Board with waiver of consent as all tests had been preformed previously. Aortic images, obtained with Multidetector CT aortic angiography (MDCT) using dual source 128 multi slice CT, were further processed by the reporting consultant radiologist for three-dimensional reconstructions to obtain volume rendered images and maximum intensity projections for assessment of the aortic arch branching variation. Echocardiograms of both the BAV and TAV patients were examined to confirm valve anatomy, (images assessed by an echocardiography trained cardiologist, not just reading reports).
Results
Results of the 129 BAV patients in the BAV database 28 had ‘readable’ (branch pattern could be clearly discerned) CT scans. Fifty-seven (double the number of BAV patients) CT aortograms were selected from the radiology archive (first 57 that were ‘readable’ from September 2011 that had also undergone echocardiography). The sex and ethnic distributions are shown in Tables 1 and 2. Eighty-five patients’ images were assessed with 28 BAV and 57 TAV. All 85 patients had their echocardiographic images re-examined to verify BAV or TAV morphology. For BAV the aortic branching patterns were: 86% normal (24/28) and 14% abnormal branching patterns (4/28), and for TAV: 70% normal (40/57) and 30% abnormal branching patterns (17/57). The BAV patients abnormal patterns were all the left common carotid artery common origin with innominate artery (as in Fig. 2), whereas the TAV patients had 16 of the type left common carotid artery common origin with innominate artery (as in Fig. 2) and one left common carotid arising from the innominate artery (as in Fig. 3). There were no true bovine variants in our group. Other anomalies found in our group include 1 coarctation (BAV patient) and 1 dissection (BAV patient). The valve morphology was discernable in 42 (49%) of the 85 CT scans.
Discussion/Conclusions
Bicuspid aortic valve has previously been quoted as having a related aortopathy, but is this embryological or functional (related to intrinsic wall properties) in origin? [7,8]. If in fact BAV patients have fewer arch variations it may support the idea that the aortopathy is related to functional changes in the wall rather than embryological origins (excluding coarctation). In our group it does not appear to affect the embryological development of the branches of the aortic arch and we actually appear to have fewer arch variants in the BAV group. Although this is a small study our TAV group had similar percentages of normal (70%) and abnormal (30%) arch variants as the reported literature [1,2,4,5]. Our BAV group is small and we will expand it further in the future but the results at this stage suggest no increase, in fact a possible decrease in arch variants compared to the TAV patients. Despite this it would not be possible to exclude an embryologically based pathological change to the aorta in BAV patients. Some racial variations have been reported but these studies were done many years ago and involved post-mortem analysis [3], and suggested that arch branching variants were more common in African Americans (about 50%) [3], but these studies would be difficult to repeat due to widespread racial mixing nowadays and could only be looked at in isolated communities with a single racial group. In Qatar 60% of the population is originally from the Asian Indian Subcontinent so there may in fact be a greater prevalence of Bicuspid valves in the MENA region patients and also Arch Variants appear to be more common in the MENA region patients. The two large radiological studies that have looked at the aortic arch anatomy showed that approximately 70% of patients had normal configuration of the arch vessels and 20% had a common origin of the innominate artery and left common carotid artery [7,8], but these studies were performed without reference to the anatomy of the aortic valve. This is the first study in the literature to look at the arch branching variants when consideration of the aortic valve morphology (BAV versus TAV) is taken into account. Although there is little physiological significance in the majority of patients, these variations may have an impact if endovascular or surgical procedures are planned in the region of the arch. BAV patients have been shown to have ascending and arch dilatation [7–11] and are more likely to require intervention than TAV patients (due to concomitant valve dysfunction), so knowing the arch anatomy will become more important. We will continue to expand our numbers as this is a relatively small study.
Acknowledgement
Mr Mohammed Abdulsamad for diagrams. Conflicts of interest, disclosures: none declared by any author.
Table 1: Sex and Ethnicity for tricuspid valves. Tricuspid Male Female Ethnicity Numbers Normal (n = 40) 36 4 Africa 0 Asian Indian Subcontinent 15 Asian Oriental 3 Caucasian 3 MENA Region 19 Arch Variant (n = 17) 15 2 Africa 1 Asian Indian Subcontinent 5 Asian Oriental 2 Caucasian 0 MENA Region 9
Table 2: Sex and Ethnicity for bicuspid valves. Bicuspid Male Female Ethnicity Numbers Normal (n = 24) 24 0 Africa 1 Asian Indian Subcontinent 7 Asian Oriental 3 MENA Region 13 Arch Variant (n = 4) 4 0 Africa Asian Indian Subcontinent 2 Asian Oriental MENA Region 2
References
[1] Kau T, Sinzig M, Gasser J, Lesnik G, Rabitsch E, Celedin S, Eicher W, Illiasch H, Hausegger KA. Aortic Development and Anomalies. Semin Intervent Radiol 2007;24(2):141–152.
[2] Layton KF, Kallmes DF, Cloft HJ, Lindell EP, Cox VS. Bovine aortic arch variant in humans: clarification of a common misnomer. American Journal of Neuroradiol 2006;27:1541–42.
[3] De Garis CF, Black IH, Riemenschneider EA. Patterns of the aortic arch in American white and negro stocks, with comparative notes on certain other mammals. J Anat 1933;67:599–618.
[4] Jakanani GC, Adair W. Frequency of variations in aortic arch anatomy depicted on multidetector CT. Clinical Radiology 2010;65:481–487.
[5] Shakeri A, Pourisa M, Deldar A, Goldust M. Anatomic variations of aortic arch branches and relationship with diameter of aortic arch by 64-row CT angiography. Pak J Biol Sci 2013;16(10):496–500.
[6] Nistri S, Basso C, Marzari C, Mormino P, Thiene G. Frequency of bicuspid aortic valve in young male conscripts by echocardiogram. Am J Cardiology. 2005;96(5):718–721.
[7] Mahadevia R, Barker AJ, Schnell S, Entezari P, Kansal P, Fedak PW, Malaisrie SC, McCarthy P, Collins J, Carr J, Markl M. Bicuspid aortic cusp fusion morphology alters aortic three-dimensional outflow patterns, wall shear stress, and expression or aortopathy. Circ 2014;129(6):673–82.
[8] Phillippi JA, Green BR, Eskay MA, Kotlarczyk MP, Hill MR, Robertson AM, Watkins SC, Vorp DA, Gleason TG. Mechanism of aortic medial matrix remodeling is distinct in patients with bicuspid aortic valveJ Thorac Cardiovasc Surg 2014;147(3):1056–64.
[9] Michelena HI, Khanna AD, Mahoney D, Margaryan E, Topilsky Y, Suri RM, Eidem B, Edwards WD, Sundt TM 3rd, Enriquez-Sarano M. Incidence of aortic complications in patients with bicuspid aortic valves. JAMA 2011;306(10):1104–12.
[10] Eleid MF, Forde I, Edwards WD, Maleszewski JJ, Suri RM, Schaff HV, Enriquez-Sarano M, Michelena HI. Type A aortic dissection in patients with bicuspid aortic valves: clinical and pathological comparison with tricuspid aortic valves. Heart 2013;99(22):1668–74.
[11] Fazel SS, Mallidi HR, Lee RS, Sheehan MP, Laing D, Fleischman D, Herfkens R, Mitchell RS, Miller DC. The aortopathy of bicuspid aortic valve disease has distinctive patterns and usually involves the transverse aortic arch. The Journal of Thoracic and Cardiovascular Surgery 2008;135:901–7.
Figure Legends
Figure 1: the most common human aortic arch branching pattern with the innominate artery (IA), the left common carotid artery (LCA) and the left subclavian artery (LSA) arising as separate branches from the arch. Other branches shown are right subclavian artery (RSA), right common carotid artery (RCA), right vertebral artery (RVA) and left vertebral artery (LVA).
Figure 2: the left common carotid artery arising from a common origin with the innominate artery. Incidental finding on the central image - left vertebral artery arising from the arch, directly after the common origin vessel.
Figure 3: the left common carotid artery originating from the innominate artery itself.
Figure 4: the true bovine arch involving a single common brachiocephalic trunk arising from the arch which then splits into the right subclavian, a bicarotid trunk and a left subclavian artery.
Table 1: Sex and Ethnicity for tricuspid valves.
Table 2: Sex and Ethnicity for bicuspid valves.
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Uncontrolled Glycemia and High Percentage of Truncal Fat Elevate Levels of CRP and IL-6 Among Patients with Type 2 Diabetes
Authors: Hiba Bawadi and Rami KatkhoudaBackground
Systemic inflammation is the continuous phenomenon of inflammatory response which can promote tissue damage. Systemic inflammation is characterized by circulatory elevation of many inflammatory mediators such as (CRP, IL-6 and TNF-α). This state plays a pivotal role in all stages of type 2 diabetes. Stages include pathogenicity and progression and chronic complication development. This study aimed at investigating the risk of systemic inflammation among type 2 diabetic patients according to glycemic control.
Objectives
This work aimed to investigate the risk of systemic inflammation among type 2 diabetic patients in relation to body fat accumulation and distribution among patients with controlled glycaemia versus poorly controlled patients.
Subjects/Methods
Study protocol and tools were approved by the research ethics committee; Institutional Review Board (IRB) at Jordan University of Science and Technology (JUST). Patients were recruited from out-patient endocrinology unit at King Abdullah University Hospital (KAUH), Jordan University of Science and Technology Health Center and major private endocrinology clinics in North of Jordan. Initial screening included 1500 patients diagnosed with type 2 diabetes. Due to the multiple co-variation nature of the relationship of interest, about 75% of the initially screened patients were excluded from the study. A total of 198 male and female patients diagnosed with type 2 diabetes participated in this cross-sectional. Patients’ weight, height, waist circumference, total body fat and truncal fat percent were measured. Venous blood specimen were collected and levels of HbA1c, serum hs-CRP, serum IL-6 were determined. A 10-ml sample of venous blood was collected from each patient by a registered nurse. HbA1c blood samples collected in Ethylene-Diamine-Tetra-Acetic acid (EDTA) tubes and measured in whole blood using the Immuno-inhibition test for the quantitative determination of glycosylated hemoglobin (Beckman Coulter AU analyzers). Blood samples of hs-CRP and IL-6 collected in Z-Clot activator tubes. Samples were allowed to clot before centrifugation for 15 minutes at 1000 × g. Aliquot of serum stored at ≤ -22°C in a sterile small tubes prior to biochemical assay. Immuno-turbidimetric test was used to determine hs-CRP levels (Beckman Coulter AU analyzers). IL-6 was measured using a human immunoassay kit from R&D SYSTEMS through sandwich-type enzyme-linked immunosorbent assay (ELISA). Absorbance Microplate reader was used to measure the optical density of IL-6 (BioTek ELx800). Anthropometrics (weight, height) were measured following World Health Organization procedures. 18 Body weight was measured with the individuals wearing no shoes and light clothing. Height was measured using measuring rod (Seca, Germany).Body Mass Index (BMI) was calculated using the ratio of weight (kilograms) to the square of height (meters) kg/m2. Waist circumference (WC) was measured to the nearest centimeter using non-stretchable circumference measuring tape (SECA 203, Germany). The site of tape placing was determined according to World Health Organization (WHO) description of middle way between the iliac crest and lower rib border. The WHO BMI cutoff points were used to classify patients based on their BMI and WC. Patients’ total body fat and truncal fat percent were determined using bioelectrical impedence technique (TANITA, BC-418). The Segmental body composition analyzer (TANITA, BC-418) used in this study was previously validated against hydro-densitometry in the assessment of body composition in healthy young adults. Body fat and percentage cut-off points used were gender and age specific based on which patients were classified into healthy, over-fat, and obese. Cut-off points for truncal fat % were gender specific based according to which patients were classified into three levels of truncal fat: low, average, and high. A P-value of < 0.05 was considered the cut-off level for statistical significance. Multivariate analysis of variance (MANOVA) was used to examine the relationship between serum levels of hs-CRP, IL-6 and glycemic control and body fatness, Least Significant Difference (LSD) post-hoc MANOVA was conducted to determine the difference between patients in different categories.
Results
Poorly controlled females had higher levels of hs-CRP as compared to poorly controlled males (P = 0.004). However, no differences were noticed in the CRP serum levels in good glycemic control group. At the same time, older patients with poor glycemia had higher serum IL-6 levels as compared to younger patients. In poor glycemic control group and after adjusting for age, gender, lipid lowering drugs and diabetes duration, the (hs-CRP) serum levels of patients with high BMI (obese) was significantly higher than that observed in the normal, and overweight patients (P-value = 0.02). Body fat percentage was significantly associated with hs-CRP serum levels inpoor glycemic control group; patients with healthy body fat percentages had lower hs-CRP (6.30 ± 0.66) compared to patients with obese patients (11.89 ± 1.30). Trunk fat mean seems to be significantly associated with patients’ hs-CRP serum levels regardless of the glycemic control groups (P-value = 0.05). Among patients with poor glycemic control, higher levels of serum IL-6 were detected in obese patients (6.10 ± 0.93) compared to those with normal body weight patients (4.06 ± 1.82). Similar trend is found with regard to WC where patients with poor glycemic control continue to have higher levels of IL-6 with higher WC (P = 0.018). Positive relationship was found between IL-6 serum levels and trunk fat percentage among all patients regardless of glycemic control.
Conclusion
Findings of the current study indicate that high subcutaneous intraperitoneal fat induces the risk of systemic inflammation regardless of glycemic control. General obesity is associated with systemic inflammation only among patients with poor glycemic control. This study had several strengths including the tough selection procedure of the participants to rule out any response to acute response to inflammation. Several blood measurements were performed on the patients including HbA1c, CRP, and IL-6 which add to the validity of our hypothesis testing. Moreover, the study operationalized obesity in different ways BMI, WC, total and truncal fat%. However, findings of this study is limited due to the cross-sectional nature of the study design.
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Enhanced Epileptic Seizure Onset Detection via the Combination of Channel Selection and Feature Enhancement
Authors: Marwa Qaraqe, Muhammad Ismail and Erchin SerpedinBackground & Objectives
Epilepsy is a neurological disorder that is associated with repeated episodes of seizures. In epilepsy, the normal pattern of neural activity is disturbed, causing the patient to experience various symptoms ranging from staring blanking for a few seconds to long periods of vigorous convulsions and unconsciousness. In many patients, the injuries they endure are a direct result of the confusion, loss of muscle control, and unconsciousness caused by the seizure. These injuries include fractures, head injuries, and burns. In an attempt to mitigate such risks, extensive research has been dedicated to developing a device that can detect or predict the onset of seizure episodes. The clinical behavior of an epileptic seizure is preceded and then accompanied by electroencephalographic alterations. As a result, electroencephalography (EEG) is the most common tool to measure these alterations. EEG measures the voltage fluctuations resulting from ionic current flows within the neurons of the brain. Research has demonstrated that epileptic seizures are caused by disturbances in the electrical activity between neurons in the brain. In the healthy brain, neurons fire in an asynchronous manner, relaying messages from one neural network to the other. However, in the epileptic brain, the complex interactions between neuronal networks are characterized by the evolution of synchronization between them. Excessive neuronal synchronization leads to a hyper-synchronous state that triggers the onset of a seizure. Extensive research has been dedicated to the detection of the earliest signs of electrographic changes associated with a seizure using either scalp or inter-cranial EEG. A device that has the ability to detect the electrographic onset of a seizure (seizure onset detector) will enable epileptic patients to lead a more normal and secure life, and will help them to avoid injuries due to the sudden nature of the seizure. At its most basic form, a seizure onset detector (SOD) is comprised of two major components, the feature extraction unit and the classification unit. In the feature extraction unit, relevant features are extracted from the multi-channel EEG and are fed into a classification unit where the features are classified as seizure or non-seizure in nature.
Methods
In this research, we present a novel patient-specific epileptic seizure onset detector using scalp EEG where we aim to exploit the benefits of integrating EEG channel selection and feature enhancement to improve the SOD's performance. Hence, we propose a detector architecture that is composed of five stages, namely, EEG channel selection, feature enhancement, spatial averaging, feature extraction, and classification. Assuming the collected scalp-EEG data contains M-channels, the channel selection stage chooses the N EEG channels that contain the most relevant electrographic seizure information. This stage is important because it reduces the detector's computational burden and omits the need to evaluate channels that have invaluable information, which may deterioted the detector's performance. The main goal of the feature enhancement stage is to emphasize the seizure EEG relative to the non-seizure EEG (background EEG). For this, a differentiation and exponentiation approach is adopted. Following the feature enhancement stage, the next stage is spatial averaging. In this stage, the N selected channels with enhanced features are averaged so that a single EEG vector is obtained. The main idea of this stage is to reduce the number of features extracted from the EEG channels to further decrease the computational complexity. The onset of a seizure is usually associated with rhythmic activity composed of multiple frequency components. Therefore, to utilize the information contained in the EEG, features are extracted from each frequency sub-band separately. A multi-resolution wavelet decomposition is used to extract relevant frequency components from the EEG. From this point, the energy from each frequency EEG sub-component is calculated as the EEG feature. The last stage of our detection is the classification and detection stage. A support vector machine (SVM) is used to classify EEG epochs as seizure or non-seizure.
Results
The data used to evaluate the proposed detector is from a publicly available database consisting of EEG recordings from pediatric subjects with intractable seizures, collected at the Children's Hospital Boston. The subjects have been monitored for up to several days following withdrawal of anti-seizure medication in order to characterize their seizures and assess their candidacy for surgical intervention. The proposed detector was tested on six of these patients, where a leave-one-out cross-validation testing scheme is adopted for each patient. In the leave-one-out cross-validation testing scheme, the SVM is given a training set that includes the seizure and non-seizure epochs from all but one of the subject's recordings. The detector then attempts to detect the seizure from the excluded recording using the learned knowledge from the training set. This process is repeated until all recordings have been tested. To test the effectiveness of our proposed detector, the energy difference between pre-seizure and seizure states are calculated for a detector that only implements spatial averaging, a detector that implements a feature enhancement stage with no channel selection, and our proposed detector. It is found that the energy difference when feature enhancement is used is higher than when no feature enhancement is implemented in the detector. The energy difference is further enhanced for the case when the detector implements both feature enhancement and channel selection. The performance of the detector is compared to a benchmark detector that uses only feature enhancement. Our proposed detector achieves a detection latency of 4 seconds, which is closely aligned with the electrographic seizure onset time that an expert has visually determined. Furthermore, the proposed detector achieves a sensitivity of 87.5% whereas the benchmark detector achieves a sensitivity level of 80.6%.
Conclusion
Our research proposes a novel architecture for an epileptic seizure onset detector. The combination of the channel selection and feature enhancement stages has led to an improved detection performance. An increase in the energy difference between seizure and pre-seizure states is observed when the proposed detection is implemented, versus implementing the detection system without any form of channel selection. The proposed system also performed better in terms of false alarm rate and sensitivity.
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Obtaining Reliable Evidence on the Determinants of NCDs in the UAE: The Abu Dhabi Cohort Study
By Raghib AliObtaining Reliable Evidence on the Determinants of NCDs in the UAE: The Abu Dhabi Cohort Study Cardiovascular disease and diabetes are extremely common in Abu Dhabi and throughout the Arab World. While cohort studies have made tremendous contributions to scientific knowledge of the epidemiology and determinants of cardiovascular disease, few have been done in Arab populations. To study the causes of these diseases and other diseases common to the Abu Dhabi, we are establishing a prospective cohort study (the Abu Dhabi Cohort Study) for epidemiologic research. In Phase I of the study, we will recruit 20,000 adult subjects from multiple sites including ambulatory care centers, universities, workplaces and blood collection centers. After providing informed consent, participants will complete a 30–45 minute survey, administered via tablet computer. The questionnaire will cover lifestyle, health habits (tobacco use, diet, physical activity), health status and other factors. Biological samples will be collected, including blood, urine and an oral wash. Physical measurements will also be carried out (blood pressure, grip strength, and anthropometric measures including weight, height, waist size and percent body fat). In Phase II, a subsample (approximately 2,000) of Phase I participants will be invited to return for non-invasive testing, which will include determinants of cardiovascular disease (carotid artery intima medial thickness and brachial artery flow-mediated vasodilation) and pulmonary function (spirometry). Study subjects will also provide consent for long-term follow-up for the adult lifespan to determine health outcomes and related health determinants through brief quarterly surveys and a longer annual questionnaire. Study design and progress is guided by an International Advisory Committee and a local Steering Committee. In order to finalize cohort study procedures, we carried out a pilot study on 500 participants in 2015. As this was the first time such a study was being done in the UAE, and following best practice from similar studies internationally and in the region, it was essential to do a pilot study first to establish both the study feasibility and to ensure that all protocols and participant materials were appropriate for the local population. The pilot study had five main objectives and the results in relation to each of these objectives are summarized below:
1. Development of participant materials (participant information leaflet, consent form and questionnaires.) The first stage of the pilot study (September to December 2014) was a series of focus groups with potential participants to develop and optimise the participant information material and study protocols. These were conducted at UAE University, Zayed University and NYUAD. Participants provided feedback on the study design, approaches to recruitment and the design of the participants’ materials including the participant information leaflet (PIL) and consent form; the questionnaire and all aspects of the assessment visit. Particular focus was given to aspects of the study which participants were unfamiliar with, such as genetic testing. In general, participants were happy with the study design and recruitment approaches, but some changes were made to the PIL in response to feedback (mainly making it shorter).
2. Assessment of participation rates for various recruitment strategies Making use of modifications suggested from the focus groups, the second stage of the pilot involved recruitment of 500 participants into the cohort study from January to May 2015, at facilities licensed by HAAD with authorisation for medical research (Zayed Military Hospital's Primary Health Care Clinic and clinic at Zayed Military City and the Abu Dhabi blood bank.) The response rate was 68% (522/769). The main reasons for not taking part were: Lack of time (60% of non-respondents)Not interested (20%) Not convinced (10%) Other (10%) Responders and non-responders were similar with respect to age and gender. No monetary or non-monetary gifts were given to participants.
3. Evaluation of baseline assessment visit. In each location, HAAD- licensed nurses carried out physical measurements including waist, hip, and neck circumferences, as well as height, weight, handgrip, blood pressure, and body composition (impedance). The nurse also assisted participants to complete a questionnaire using an iPad, and collected blood, an oral wash and urine samples. The assessment visit took most participants between 40 to 60 minutes. Completion rates for the various components of the study were approximately: Questionnaire – 70% Physical measurements – 80% Blood 95% Urine 80% Mouthwash 80% Based on the pilot study experience, one nurse and one research assistant are required to recruit, consent and collect materials from about 10 people daily.
4. Assessment of procedures for biological sample collection, transport and processing. Blood, urine and mouthwash samples were transferred to NYUAD laboratories; aliquots of which were stored at – 80°C for analyses. Samples will be analysed for a battery of routine and specialized biochemical markers from May 2015 to December 2015.
5. Assessment of acceptability of various parts of the study A brief post-visit questionnaire was sent to all participants by email/SMS to assess their understanding of key components of the consent (as well seeking opinions on the assessment visit and highlighting any areas for improvement). Of 330 questionnaires sent by email, 34 were completed (10% response rate). In response to the question ‘How would you answer if a close friend or family member were to ask you “should I participate in the Abu Dhabi Cohort study?”, 80% said they would definitely take part. Analyses of data collected in the pilot study Simple descriptive analyses of questionnaire and physical measurements data collected in the pilot study were carried out to help inform sample size calculations for the main study. Crude (not age-adjusted) prevalence for selected characteristics are shown below: Selected baseline characteristics Men Women Number of participants 325 150 Mean age 32 30 Self–reported Diabetes 8 9 Self-reported Hypertension 11 12 Self-reported Hypercholesterolemia 19 11 Overweight 34 25 Obese 23 18 Cigarette smoking 18 1 Midwakh smoking 17 1 Shisha smoking 13 2
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Knowledge, Attitude, Perception and Experience of Pharmacist in Qatar Towards Drug Use in Pregnancy: A Cross-Sectional Study
Authors: Binny Thomas, Pallivalappila Abdulrouf, Moza Alhail, Wessam Elkassem and Asma TarannumBackground
Maternal health refers to the health of women pre-pregnancy, during pregnancy, childbirth and postpartum. Pregnancy is a state of altered physiology and medication use during this period is remarkably challenging. For various reasons medication use during pregnancy cannot be completely avoided however, due to altered drug pharmacokinetics and crossing of placenta many of these drugs could significantly still harm the growing fetus. Pharmacists are medication experts with great knowledge of pharmacology, pharmacokinetics and are trained to apply evidence based clinical knowledge. Although pharmacists are having great potential to modify and optimize drug therapy in pregnancy, current evidence demonstrates they do not actively provide this care and are least interested in doing so.
Objective
The primary objective of the study was to determine the knowledge, perception, attitude and experience of pharmacist in Qatar regarding risk benefits ratio, concerns, advice, and source of information about drug use in pregnancy and secondary objective aimed to correlate knowledge with different variables.
Methods
A prospective cross sectional questionnaire based study was conducted by Women's Hospital pharmacy department for 3 months in 2010 (June – August). A 23-item self-completed anonymous questionnaire was distributed to 400 licensed pharmacists in Qatar including community pharmacists, hospital pharmacists, Primary Health Centers (PHC) and pharmacists working in polyclinics. Five pharmacists from women's hospital were selected to distribute and collect the questionnaire. A convenient sampling technique was used. All licensed pharmacist were included while pharmacy technicians were excluded. Pilot study was conducted on 30 pharmacists (16 community and 14 hospital pharmacists), were almost consistent in terms of answering, except for two questions (concerning knowledge and pharmacists confidence levels while dealing with physicians) which were modified accordingly. The questionnaire was classified into 4 sections: 1) Section 1, about their practice 2) Section 2, about knowledge and perception of medication use in pregnancy 3) Section 3, about pharmacist's level of confidence while dealing with patient and physician 4) Section 4, about source of drug information and certain general statements regarding their beliefs Data was analyzed by SPSS version 17. Descriptive statistics was applied for all the collected variables. Knowledge level of each respondent is determined by ranking their answers based on a scale developed with maximum 28 scores. To see association between Knowledge levels and variables, χ2 test was used. P value 0.05 was considered as statistical significant. The study conformed to the ethical principles of Hamad Medical Corporation Research center. Descriptive statistics was applied for all the collected variables.
Results
An overall response rate of 51.75% (207/400) was obtained, and majority (54.1%) of whom were males. The highest percentages of respondents were practicing hospital pharmacists (46.8%), followed by community pharmacist (35.3%) whereas only 13% responded from primary healthcare centers. Most of them had a bachelors' degree (95.7%) in pharmacy. More than 50% of pharmacists responded to have no continuous education or received any CE points in last 12 months. 66% of these respondents reasoned work related issues (time, workload) for not attending these educational activities. 86% of the respondents were aware of the risk and benefits associated with the medication use in pregnancy. Majority (64.7%) of pharmacist possessed ‘average knowledge levels’, 34.3% with ‘good knowledge’ very few (1%) had ‘very good knowledge’. Only 33.3% were comfortable giving advices/counselling to pregnant women. Approximately 89% (strongly agree 39.6% and agree 49.8%) respondents believed they were competent enough to inform pregnant population about their medication where as 1.5% disagreed (strongly disagree 0.5% plus 1% disagree) and around 9% being unsure. Respondents with experience of 5 years and above had better knowledge levels than others. There was a significant positive association between respondents having Continuous Educational activities and their knowledge levels. Respondents who were very comfortable and somewhat comfortable (69.4%) were more knowledgeable than those uncomfortable and somewhat uncomfortable (10.6%). Knowledge of respondents who contacted prescribers with an alternative medication was 79.6% compared to ones who contacted prescribers without an alternative 8.3%. Respondents who agreed and strongly agreed that they were confident enough to advice both physicians (87%) and pregnant patients (91.3%) were more knowledgeable than others.
Conclusion
Our study provided a baseline data regarding knowledge, perception and experience of pharmacist in Qatar regarding drug use in pregnancy. With majority of respondents lacking educational activities, there is an urgent need to stress on the importance of continuous pharmacy education tailored to meet the requirements of specialized areas. Pharmacist should be aware of medications used during pregnancy and should be familiar regarding risks and benefits of the medication used and to provide appropriate drug related information to pregnant women and healthcare professionals taking care of pregnant women.
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An Estimate of the Incidence,…
More LessIntroduction
Stroke, a neurological disorder that continues to be considerable burden on health systems due to high fatality rates and a major disability in survivors. Despite a decline in stroke incidence in the developed world, developing nations are still facing the problem at its eminent peak. Over 80% of all stroke deaths in the world occur in developing countries. This includes the MENA region, which not only comprises of the hugely populated and lesser developed countries in the world but some nations also has varied ethnic group due to prominent immigration predominantly from South Asia and South-east Asia.
Studies have shown that different ethnic groups have different pre-disposing factors, epidemiological patterns and outcomes of stroke. These variations can be due to lifestyle, demographic, and/or socioeconomic factors. These differences can not only significantly change the course of treatment and management of stroke, but also change the methods applied towards the prevention of stroke, which is shown to be significant in order to reduce the incidence of stroke in a region. In the absence of significant global public health response the morbidity and mortality rates will only go higher.
The MENA region comprises of a unique mix of low to middle income countries and high-income countries. But the common elements in all these countries include increase urbanization, unchecked population growth, increased consumption of western diet, obesity and inactivity. Moreover, the health services and public health response is not at par with the growing problem in hand.
Methods
Data sources and search strategy
We conducted a systematic review of the prevalence and incidence of Stroke in the 23 countries of MENA region (Sudan, Somalia, Djibouti, Pakistan, Afghanistan, Algeria, Bahrain, Egypt, Jordan, Kuwait, Lebanon, Libya, Iran, Iraq, Morocco, Oman, Qatar, Saudi Arabia, Syria, Tunisia, United Arab Emirates, Palestine and Yemen). The review was conducted following the PRISMA guidelines and the PRISMA checklist can be found on Figure S1 in Supporting Information (SI). Our search criteria can be found in Figure S2 in SI. Briefly, PubMed and EMBASE databases were used for this review. The databases were searched using text terms and MeSH/Emtree terms exploded to cover all sub-heading. We used a broad search criterion with no restrictions for language, or year of publication.
Study selection
The search results were imported to a reference manager, Endnote, and screened for duplicate papers. After exclusion of duplicates the titles and abstracts of the final set of distinctive papers was exported to Microsoft Excel. All the extracted articles were screened for relevance by two authors (SA and DD). The process of Screening was conducted in two separate steps: First level of screening involved screening titles and abstracts of all papers to exclude all non-relevant articles; second level involved screening the full-text of all relevant or potentially relevant articles thus, excluding all non-eligible articles. Any paper reporting the incidence or prevalence of stroke based on primary data were included in this review. All forms study designs except literature reviews, case reports, case series editorials, and letters to editors were included in the review. A publication is included in the review if it had a data point on either the prevalence of acute stroke, or the incidence of acute stroke, or both.
Data extraction and data synthesis
Data from relevant articles was extracted by two authors, SA and DD, for the following indicators: author, year of publication, year of study, country of study,study design, sampling technique, population, sample size, stroke incidence and stroke prevalence. Though the articles were not search for mortality and risk factors, this information was extracted from relevant reports when available. Data was extracted from abstracts when the full text is unavailable. Any studies in Arabic or French were screened by author DD.
Results
Conclusion
Figure 1
Reasons for exclusion
Full-text did not include data on relevant indicators (n = 191)
Article is an editorial/commentary/letter to editor (n = 4)
Full-text could not be retrieved and abstract does not have data on relevant outcomes (n = 15)
Reasons for exclusion
Same dataset as another included relevant publication (n = 5)
Paper presents contradictory/unclear numbers that could not be verified (n = 0)
References
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Study of the Effect of Calreticulin on Orai1 Function
Authors: Satanay Zuhair Hubrack, Awab Ibrahim and Khaled MachacaCalreticulin is a molecular chaperone responsible for proper protein folding in the endoplasmic reticulum (ER), and supports assembly of protein oligomers. Calreticulin also plays a role in quality control of protein expression in the ER. Calreticulin is a ubiquitous protein that shows high levels of expression in fetal cardiomyocytes. Both knockout and over-expression of Calreticulin in the mouse embryos is lethal arguing for an important role for this protein in survival and importantly for tight regulation of its expression in that regard to support physiological functions. Interestingly, over-expression of constitutively active Calreticulin only in the hearts of Calreticulin-null mice, rescues the lethal phenotype. Collectively these results argue for an important role for Calreticulin in the development and differentiation of cardiac myocytes. The exact mechanism by which Calreticulin affects cardiac development remains unclear. Previous studies on Calreticulin knockout cells showed inhibition of IP3– dependent Ca2+ release, suggesting a role for Calreticulin in Ca2+ homeostasis. Ca2+ is a ubiquitous second messenger that can be either release from intracellular Ca2+ stores or flows into the cell from the extracellular space through multiple Ca2+ influx pathways at the cell membrane. Ca2+ release occurs through either the IP3-receptor (IP3R) or the ryanodine receptor depending on the cell type. An important Ca2+ influx pathway at the cell membrane is the store-operated Ca2+ entry pathway (SOCE). SOCE is activated in response to the depletion of intracellular Ca2+ store following Ca2+ release. SOCE is mediated by two primary molecules, stim1 and Orai1. stim1 is an ER resident membrane protein with lumenal EF-hands that allows it to sense ER Ca2+ levels. Upon store depletion stim1 clusters and moves close to the cell membrane where it binds to and activates Orai1. Orai1 is a four trans-membrane pass Ca2+ channel that is gated by direct coupling to stim1. Both Orai1 and Stim1 were shown to be expressed in cardiomyocytes and required for cardiomyocyte SOCE. SOCE is important in cardiomyocyte biology and was shown to regulate normal and hypertrophic postnatal cardiac growth. Moreover, studies in zebra fish suggest an important role of Orai1 in regulating cardiac function, linking Orai1-mediated calcium signaling to cardiomyocyte function. Ca2+ influx through SOCE has been shown to activate the transcription factor, nuclear factor of activated T-cells (NFAT), by enhancing its translocation from the cytoplasm to the nucleus, leading to specific induction of gene expression. NFAT activation occurs downstream of the activation of the Ca2+-dependent phosphatase calcineurin. This nuclear import of NFAT was shown to be impaired in Calreticulin knockout cells. This supports a role for Calreticulin in the Ca2+/calcineurin/NF-AT transcription pathway. Here we use Calreticulin knockout MEF cells to study the effect of the absence of Calreticulin on SOCE. We specifically focus on Orai1, and study its subcellular localization and function in Calreticulin knockout MEFs as compared to wild type MEFs. We used specific Ca2+ imaging assays to asses SOCE function. Our Calcium imaging data show no difference in SOCE between wild-type and Calreticulin knockout MEF cells. We further studied the membrane trafficking and plasma membrane localization of YFP-tagged Orai1 in knockout MEF cells. Calreticulin knockout cells show higher proliferation rate than wildtype cells in culture, which will be further investigated by MTT and CFSE labeling. Our results suggest that the lethal phenotype in Calreticulin-null mice is not due to improper folding of Orai1, but can be related to the change of calcium homeostasis in the absence of Calreticulin.
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Novel Mitochondrial-Derived Peptide MOTS-c Inhibits Adipogenesis through Down Regulation of Master Gene PPAR in Murine Adipocytes
Objectives
Metabolic syndrome is a cluster of conditions—increased blood pressure, a high blood sugar level, abdominal fat accumulation and abnormal cholesterol levels—that occur together, increasing the risk of heart disease, stroke and type 2 diabetes mellitus (T2DM). Mitochondria play a central role in the energy metabolism. Mitochondrial dysfunction contributes to the pathogenesis of metabolic disorders. Abnormality in mitochondrial function is a leading cause for development of insulin resistance and is promoted, at least partly, through lipid accumulation in ectopic tissues, including liver and skeletal muscle. Many growth and transcription factors involved in the regulation of mitochondrial gene expression also contribute to the pathophysiology of obesity, insulin resistance and type-2 diabetes. The role of mitochondria as functional organelles, and the signaling molecules produced by them are critical in the regulation of cellular energy metabolism and homeostasis. MOTS-c (mitochondrial open reading frame of the 12S rRNA type-c) encoding a 16-amino-acid peptide is a recently identified peptide. The skeletal muscle appears to be the main target organ for MOTS-c and its cellular actions inhibit the folate cycle and its tethered de novo purine biosynthesis, leading to AMPK activation. MOTS-c increases glucose utilization, promotes insulin sensitivity and metabolic homeostasis through activation of AMPK dependent mechanisms in skeletal muscle. In rodent studies MOTS-c has been demonstrated to protect against insulin resistance induced by diet and ageing. However the role of MOTS-c in adipocytes is largely unknown. In this current study we aimed to study the effect of MOTS-c on adipocyte development and metabolism in cultured mouse adipocytes.
Methods
3T3L1 cells were grown in DMEM media containing 10% FBS. Cells were stimulated with various concentrations of MOTS-c (100 nM to 50 μM) to study the effect of MOTS-c on cell viability. For differentiation pre-adipocytes were grown in differentiation induction medium containing dexamethasone, IBMX and insulin for two days. The media was replaced with medium containing insulin only for the next six days. About 60–70% differentiation was achieved by day 8. For treatment group pre-adipocytes were pre-treated with MOTS-c for 24 hours, and then differentiated into adipocytes for eight days. Quantitative real-time PCR was used to investigate the effect of MOTS-c on adipogenic genes expression:, Peroxisome Proliferator-Activated Receptor Gamma (PPARg), AP2, adiponectin and leptin in mouse 3T3-L1 pre-adipocytes.
Result
MOTS-c treatment did not induce any significant changes in cell viability at 24h following treatment. Pretreatment with MOTS-c prior to induction of differentiation down regulated expression of adipogenic markers including leptin, adiponectin, PPARg and PPARg-coactivator 1-alpha (PGC1a) mRNA levels, compared to differentiated adipocyte controls.
Conclusion
Our primary result indicates that MOTS-c inhibits adipogenesis through down-regulation of multiple genes involved in development of adipocytes, and this inhibition could contribute to the reduced abdominal adiposity. Future studies are currently in progress to further assess the effects of MOTS-c on adipocytes lipolysis, glucose uptake, glucose transporter (GLUT) family and other insulin-signaling pathway protein including GSK3B, IGF1R, IGF2R, and PIK3K are needed to understand the role of MOTS-c in mouse 3T3-L1 adipocytes.
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Electrode and Stimulation Parameters for a Thalamic Visual Prosthesis
Authors: John B Troy, Hieu T Nguyen, Chen Meng and Corey M RountreeIntroduction
Our long term goal is to develop a visual prosthesis which interfaces with the thalamic visual center of the brain to restore vision to patients who have lost sight through glaucoma, the leading cause of blindness for which no satisfactory medical treatment exists. Glaucoma is a group of neurodegenerative disorders that affects the retinal ganglion cell (RGC) layer of the eye in 60 million people worldwide [1] and is a disease especially prevalent among peoples of the Gulf region. RGCs link the early visual signal processing of the eye with subsequent visual processing centers of the brain. Of these structures, the lateral geniculate nucleus (LGN) located in the thalamus is the primary target for RGC signals. Many groups are seeking to combat vision loss through use of prostheses; currently, two retinal prostheses are approved clinical devices. Because these retinal prostheses require intact RGCs, they have merit for patients with diseases like age–related macular degeneration (AMD) and retinitis pigmentosa, but not for patients who face blindness through glaucoma. Our proposal that seeks to address all people rendered blind, either through diseases of photoreceptor degeneration (e.g., AMD) or through loss of RGCs (i.e., glaucoma) is to develop a high density multi–electrode array (MEA) that can be used to electrically stimulate many neurons of the human LGN (Fig. 1). Figure 1. Visual processing begins in the eye then data are relayed into the brain via the optic nerve to the LGN and subsequently to the visual cortex. Although each of these structures has been a target for visual prostheses, we propose that MEA stimulation of the LGN is a promising technique to address all forms of blindness.
Objectives
The primary objective of the current study has been to determine the optimum electrode materials and stimulus parameters to safely and efficiently stimulate LGN neurons electrically using a multielectrode array (MEA).
Methods
Retina preparation
The retina is a displaced part of the central nervous system that develops like the thalamus from the embryonic diencephalon. RGCs therefore provide for a convenient and advantageous target, because they can be both stimulated visually and electrically in vitro, for early stage testing of electrode performance for LGN stimulation. Retinal tissue was taken from 3–6 month old C57BL/6 wild–type mice. To maintain normal visual–evoked responses from RGCs and be assured that the retina is undamaged before testing the electrodes, mice were sacrificed without drugs and retinas were isolated in darkness. Briefly, mice were first dark–adapted for 1 hr to retain light sensitivity then euthanized by cervical dislocation. Eyes were immediately removed and the retinas were excised in artificial cerebrospinal fluid (ACSF) within 15–20 min using an IR stereomicroscope. The retina was flattened on the MEA with the ganglion cell layer adjacent to the electrodes. The retina was maintained at room temperature (21°C) and perfused with oxygenated ACSF (95% O2, 5% C02) at 3–5 ml/min. Visual and electrical stimulation The MEAs (Multichannel Systems, Reutlingen, Germany) used in experiments consisted of 60 electrodes (30 μm in diameter, separated by 200 μm) arranged in a 2–D planar 8 × 8 rectangular array with a glass ring fixed to the surface to create a chamber for the perfusion medium. The three electrode coatings tested were titanium nitride (TiN), iridium oxide (IrOx), and poly (3,4–ethylenedioxythiophene)–carbon nanotubes (PEDOT–CNT). Visual stimulation of the retina with Gaussian white noise light patterns for 30 min at a 15 Hz refresh rate was performed utilizing a lens to focus the image of a LCD microdisplay (Kopin Ruby SVGA Microdisplay, Edmund Optics, Barrington, NJ, USA) onto the same plane as the MEA electrodes [2]. Electrical stimulation and recording of neurons was performed in a MEA system (STG1002 and MEA1060–Inv–BC, Multichannel Systems, Reutlingen, Germany). The STG1002 stimulator was programmed to deliver current–controlled biphasic symmetrical waveforms with positive or negative phase first, square or sine waveforms, current amplitude ± 1–500 μA, single phase pulse width 40–1000 μs, and frequency 1–200 Hz. Spike Sorting RGC spike trains were processed using a combination of MC Rack to record raw spike records (Multichannel Systems, Reutlingen, Germany), Offline Sorter to identify individual unit spike waveforms (v3 spike sorter, Plexon Inc., Dallas, TX, USA), Matlab for further sorting of units (Mathworks Inc., Natick, MA, USA), and Neuroexplorer for data analysis (v3, Nex Technologies, Madison, AL, USA). The records were sampled at 10 kHz after high pass filtering at 200 Hz. The inherent noise of the system was 5–20 μV depending upon the electrode material, and the voltage threshold for a spike event was set at 20–24 μV to ensure all spikes were at or above the noise level.
Results
Electrode material sensitivity for recording neural spikes Filtered recordings from the three electrode materials were compared to determine their sensitivities for stimulation of RGCs. Several steps were used to ensure recordings obtained were real spikes and not noise or artifacts from the delivered electrical stimulation. Firstly, stimulation signals are biphasic, meaning the charge delivered is equal to the charge returned, eliminating residual charge in the area. The MEA system employs a blanking circuit by which the recording electrodes become disconnected from the MEA during stimulation and do not reconnect until 640 μs has passed in order to avoid electrical artifacts. Through MC Rack software, a 200 Hz high pass filter was implemented so all slow–rising spikes are removed and spike thresholds were set above the noise level for each material. Finally, spikes were sorted with Offline Sorter to separate spikes that are neuronal units from artificial “neuronal like” spikes. The graphs in Fig. 2 illustrate the filtered analog recordings (raw data without threshold, before sorting) of the three electrode materials when stimulating retinas with a 1 μA, 200 μs, 50 Hz biphasic square pulse. The data indicate that recordings with TiN electrodes recorded more noise (noise level around 10–12 μV) than IrOx or PEDOT–CNT electrodes (noise level 5–8 μV). Although the higher noise might suggest that TiN electrodes may be a more sensitive material for recording neural spikes, in fact the signal–to–noise ratio (SNR) was worse than for electrodes of the other two materials, making it less desirable for use as a recording electrode. TiN appeared to record more spikes in the analog data (Fig. 2), however further analysis (as shown later) identified the spikes as being stimulus artifacts. Because TiN delivers stimuli through capacitive charging, it is possible that the blanking time is insufficient and residual charge results in false spikes. IrOx and PEDOT–CNT provided better recording performance with stronger SNR and more reliable spikes. Figure 2. The plots above show representative examples of the raw records obtained from the MEA system for stimulation through different electrode materials. The records come from an electrode 600 μm from the stimulating electrode. The y–axis is the recorded signal amplitude (μV) and the x–axis is a section of time during a stimulus train (0–350 ms). The timing of electrical stimulation pulses (50 Hz) is shown as black bars above the plots. Stimulation efficacy for different electrode materials Tests were conducted on two mouse retinas for each electrode material. Electrode 55 (column 5, row 5) was assigned to be the stimulation electrode and a ground electrode was placed in the media above the MEA. Electrical stimuli were delivered with either a rectangular or a sine wave shape while changing one stimulus parameter at a time; the standard stimulus was a constant 50 μA, 200 μs, 100 Hz. Each stimulus waveform was delivered to the retina 2000 times. Recordings were analyzed for each electrode from − 2 to ?8 ms surrounding a stimulus. The heatmap (Fig. 3) displays the total number of cell spikes recorded during this time window arranged in an 8 × 8 array corresponding to the MEA. Results for two electrode materials are shown (PEDOT–CNT and TiN). The results for IrOx were similar to those for TiN. For the same stimulus conditions, we found that stimulation with PEDOT–CNT electrodes was considerably more effective in evoking spike responses from mouse RGCs than was the case with either stimulation with IrOx or TiN electrodes. Increasing the amplitude of the current used for stimulation through PEDOT–CNT electrodes increased spike responses but not for stimulation with TiN or IrOx electrodes in the range that we tested. Waveform shape, frequency, and pulse width did not appear to affect the number of spikes after stimulation much. The fact that evoked responses were insensitive to increases in stimulus amplitude through IrOx or TiN electrodes suggests that we may have failed to reach the threshold to drive many RGCs for stimulation with these materials. In any event, the key result is quite clear – PEDOT–CNT electrodes provide a far superior interface for electrical stimulation of RGCs and, by inference, LGN neurons. Figure 3. Heat maps showing the total number of spikes recorded within − 2 to ?8 ms of an electrical stimulus at each position in an 8 × 8 array correlating to the MEA electrode layout. Dark blue ? 0 spikes and Red–brown ? 3000 spikes recorded during a period of 2000 stimuli. By increasing the current amplitude from 50–500 μA, more spikes were recorded when stimulation was fed through PEDOT–CNT electrodes, but no significant increase was observed when stimulation was through TiN or IrOx (not shown) electrodes. Square or sine wave shape did not appear to affect the degree of RGC stimulation much. Comparing visual and electrical stimulation Both visual and electrical stimulation can evoke responses from RGCs (Fig. 4) but there are some differences. The main difference we observed was that multi–unit responses were more frequent during visual stimulation. This is likely because axonal units with receptive fields and thus axon initial segments (the point of low threshold spike activation) distant from the electrical stimulation site could be activated by visual but not electrical stimulation and recorded on the electrode of interest. This hypothesis does however require further investigation. Current results suggest that somal units recorded on an electrode can be equally activated by either electrical or visual stimulation, as shown in the plots below where the average waveform shape are nearly identical. Figure 4. The plots above show the set of spike shapes recorded 600 μm from the stimulating electrode. The green lines represent all the waves recorded from a single channel. Red is the average waveform (template) and blue is ± 3 standard deviations. (A) Waveforms were recorded during (A) visual stimulation and (B) electrical stimulation. There are fewer spikes recorded during electrical stimulation but the population averages are not significantly different.
Conclusion
We have tested three different materials for recording and electrical stimulation of RGCs: TiN, IrOx, and PEDOT–CNT. The IrOx and PEDOT–CNT electrodes both have lower noise compared with the TiN electrode. Most significantly, the PEDOT–CNT electrode performed considerably better in stimulating RGCs electrically than both of the other two electrode materials. Changing the current amplitude elicited changes in spike recordings more so than any changes in duration, frequency, or waveform. We also found electrical stimulation can evoke spikes as readily as visual stimulation, indicating that electrical stimulation may indeed interface naturally with the visual system. The major result of this study is that electrodes coated with PEDOT–CNT are more likely than IrOx or TiN to permit effective stimulation of neurons. The search for a material with high sensitivity is critical for our goal of creating a high density MEA for stimulation of the LGN in blind patients. The next step for us in this project is to demonstrate that vision can be restored in a blind animals through electrical stimulation of the LGN in vivo.
Acknowledgment
All of the work reported here was funded by NPRP grant # NPRP 5-457-2-181 from the Qatar National Research Fund (a member of Qatar Foundation).
References
[1] Quigley HA and Broman AT. 2006. The number of people with glaucoma worldwide in 2010 and 2020. Br J Ophthal 90(3):262–267.
[2] Inayat S, Rountree CM, Troy JB, and Saggere L. 2015. Chemical stimulation of rat retinal neurons: feasibility of an epiretinal neurotransmitter–based prosthesis. J Neur Eng 12(1).
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Hypoglycemic and Hypolipidemic Effect of Active Compounds (Glucokinin or Plant Insulin) from Bauhina Variegate L. in Alloxan Induced Diabetic Mice
More LessThe study includes the isolation and extraction of some active molecules like (flavonoid and total poly phenolic) and plant insulin (Glucokinin) from leaves and flowers of B. variegate L. belonging to the family Leguminosae which cultivated in Iraq. Also the study employed an in vivo evaluation of Bauhinia leaves (petroleum ether and methanol extract) and methanol extract and flowers extraction in mice at concentrations (200 and 400 mg/kg) for (LM1 and LM2) and (200 mg/kg) for F given intra peritoneal for 10 days after inducing diabetes mellitus type 2 by alloxan (200 mg/1 kg body weight). The serum was isolated from blood by cardiac puncture for the biochemical tests, including glucose, cholesterol (ch), Triglyceride (TG), high density lipoprotein (HDL), low density lipoprotein (LDL) and very low density lipoprotein (VLDL). At day 10 the animal was killed and the liver and pancreas were kept in 10% formalin for preparation of histopathological sections. We concluded that the Plant insulin (Glucokinin) may be responsible for some of the actions at plant extracts for their antidiabetic properties. From the observations, it was concluded that the reduction of blood glucose levels in diabetic rats were found to be dose dependent and also dependent on duration of action. So it might be useful in the treatment of diabetes without toxicity.
Keywords
Bauhinia variegata, Antidiabetic activity, Hyperglycemia, Hypolipidemic
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Bioactive Components from Ginger, Tea and Apple Prevent Protein Glycation by Trapping Methylglyoxal with Potential in Alleviation of Diabetic Complications
Authors: Shengmin Sang, Yingdong Zhu, Pei Wang, Yantao Zhao, Chethan Sampath and Mohamed AhmednaDiabetes is the fifth-deadliest disease in the United States. Most diabetes patients die from diabetic complications, such as renal failure, heart attack or stroke. However, diabetic complications are still neither preventable nor curable. New strategies that can prevent, treat, or cure diabetic complications are needed. Increasing evidence has identified the formation of advanced glycation end products (AGEs) as a major pathogenic link between hyperglycemia and diabetes-related complications. In diabetes, formation of AGEs occurs at a higher rate when compared to non-diabetic normal individuals. Alpha-oxoaldehydes such as methylglyoxal (MGO) and glyoxal (GO), the reactive dicarbonyl intermediates generated during the non-enzymatic glycation between reducing sugars and amino groups of proteins, lipids, and DNA, are precursors of AGEs and exert direct toxicity to cells and tissues. Levels of MGO and GO were observed to be 2–6 times higher in diabetic patients' plasma as compared with healthy people's plasma. In addition, this is complicated by many food products and beverages representing exogenous sources of MGO and GO. It is likely that decreasing the levels of MGO and GO and inhibiting the formation of AGEs will form an important component of future therapy in patients with diabetes. Numerous studies have reported that bioactive components in ginger, tea and apple can prevent diabetes and its related complications. However, the underlying molecular mechanisms are still largely unknown. In this project, we investigated the effect of bioactive compounds in ginger ([6]-shogaol (6S) and [6]-gingerol (6G)), tea (epigallocatechin gallate (EGCG)) and apple (phloretin and phloridzin) to inhibit the formation of AGEs via trapping MGO. We demonstrated for the first time that both [6]-shogaol (6S) and [6]-gingerol (6G), the major active components in ginger, markedly trapped MGO in vitro and consequently formed mono-MGO adducts, 6S-MGO and 6G-MGO, which were purified from the respective chemical reaction and characterized as novel compounds by NMR experiments and LC-MS/MS approaches. We revealed that the α-carbon of carbonyl group in the side chain of 6S or 6G is the major active site for trapping MGO. We also demonstrated that 6S and 6G could effectively inhibit the formation of MGO-induced AGEs via trapping MGO in a time-dependent manner in the human serum albumin (HSA)-MGO system. Mono-MGO adducts, 6S-MGO and 6G-MGO, were determined to be the major conjugates in 6S- and 6G-treated HSA-MGO assays, respectively, using LC-ESI/MS techniques. These findings showed the potential effects of 6S and 6G on the prevention of protein glycation, suggesting regular consumption of ginger root extract may attenuate the progression of MGO-associated diabetic complications in patients. Similarly, we found that both EGCG and phloretin could inhibit the formation of AGEs through the same pathways. In addition, we also studied whether these compounds could inhibit the formation of AGEs via trapping MGO in high fat diet treated mice. Two different doses of 6G, EGCG and phloretin (25 mg/kg and 75 mg/kg) were given to mice through oral gavage for 16 weeks. Plasma and tissue samples were collected from control and treated mice. The formation of MGO adducts of each compound were analyzed using our established LC/MS methods. The levels of MGO and AGEs were also quantified.
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Evaluation of an Intervention to Decrease False Positive Blood Culture Contamination Rates in Emergency Department
More LessIntroduction
Blood cultures are commonly performed in hospitals daily as it is employed to detect infections that are spreading through the bloodstream (eg; bacteremia, septicemia). This is possible because the bloodstream is usually a sterile environment. Positive blood cultures indicate either bacteremia, or false positive blood cultures from contamination with bacterial skin flora through improper technique. False positive blood cultures are associated with unnecessary hospitalization and/or extended length of stay with consequent financial burden. False positive blood culture rates in Emergency Departments (ED) are often twice as high as on the medical wards. We present the results of an intervention – ANTT (Aseptic Non-touch technique) to decrease false Positive blood culture rates at Hamad General Hospital during the period from Nov 2014 through Nov 2015.
Aim
The HGH Microbiology lab indicator showed that our blood culture contamination rate has been consistently higher than the international benchmark, thereby we aim to reduce it in the critical area of ED BY 50% by the end of July 2015 and at least 90% by end of February 2016.
Methods
A pilot area was chosen in the Emergency Dept. to do a study for 44 weeks after which blood culture kits (previously trolleys & trays were used) containing sterile gloves, masks, and blood culture supplies were introduced into the Critical area of ED-HGH in August 2015. Training included- new instructions to have two staff members present when drawing blood cultures (Preceptor-preceptee methodology) there by prohibiting drawing blood cultures from pre-existing lines and proper follow-up of every step. False positive blood culture rates were measured in the weeks preceding and the weeks following, this intervention.
Results
In the 8 weeks following the intervention, the average false positive blood culture contamination rate in HGH ED reached 1.9%–(which was the benchmark) out of 318 blood culture samples. In the 6 months preceding, the blood culture contamination rates ranged from 4% to 1.5% each month.Conclusion:Blood culture kits and educational training on proper technique resulted in significant reduction (> 60%) in the false positive blood culture rate in the Critical areas of ED-HGH. Studies at other institutions have suggested that reducing the false positive blood culture rate could decrease costs by preventing unnecessary hospitalizations and administration of unnecessary antibiotics, as well as helping to prevent the development of multi-drug resistant organisms.
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Institutionalize Patient Related Communication in the Emergency Department of Hamad General Hospital through the Use of Sbar Communication Pattern
More LessIntroduction
Sbar is a techinique that can be used to facilitate prompt and appropriate communication. It is a way for healthcare proffessionals to communicate effectively. The sbar tool is a memory prompt which helps the medical staff handover, prepare information just before handing over the required details/outcomes/result of the concerned patient from one shift to another shift duty incharge.
Aim/objectives
To increase and starndardize the usage of sbar as a communication tool among the clinical staff in the emergency department of hamad general hospital to 100% by feb 2016.
Methods
The project was done in an iterative four-step continuos improvement method through careful monitoring in various areas of ed to collect the baseline data. Sbar champ were chosen from each area to facilitate & coordinate the project to most of emergency dept. Sbar endorsement form was introduced for the nurses between shifts to notify information. Champion docs, nurse educators & quality reviewers decided on educational sessions to the ed-nurses & physicians. Educational sessions consisted of role play, scenario based and simulation training for the nurses & doctorsto make them understand the relevance of sbar. A monitoring tool was developed for “secret audit” on sbar usage.
Results/outcomes
There has been a spike in the usage of sbar by the nurses & doctors during the endorsement time and between the work schedule. With the help of the charge nurses and sbar champions who regularly change from day to day, careful monitoring has been placed in various areas of the emergency department which has led to such significant achievement. As of now the measurement and the testing has been done with the nurses, physicians, ecg technicians, respiratory therapists and also the quality reviewers. We are soon planning to include ems for the same training and by end of june, we will make sure the whole emergency dept will be talking & reporting in sbar.
Conclusions
Interproffesional communication activity is needed at the entry level for all proffesionals.Sbar is a teachable skill that is recognized by all healthcare workers as a safe effective method of communicating among providers. We will soon spread this communication between units & during transfers also.
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Bortezomib Mediated Downregulation of F-box Protein, S-phase Kinase-Associated Protein 2 (SKP2) Causes Apoptotic Cell Death in Chronic Myelogenous Leukemia Cells
Authors: Shahab Uddin, Ahmad Iskandarani, Siveen Sivaraman, Ajaz Bhat, Fayaz Mir, Michal Kulinski and Ramzi MohammadBackground
Chronic myeloid leukemia is characterized by the reciprocal chromosomal translocation t(9;22)(q34;q11), leading to the formation of the Philadelphia chromosome. This encodes the constitutively active Bcr-Abl tyrosine kinase, which profoundly affects proliferation, apoptosis, and cell adhesion signaling pathways. Despite remarkable success in controlling CML at chronic phase by Bcr-Abl tyrosine kinase inhibitors (TKIs), a significant proportion of CML patients treated with TKIs develop drug resistance. Therefore, there is an urgent need for more potent and safer therapies against CML cells for the efficient management of CML.Proteasome inhibitors are attractive cancer therapeutic agents because they can regulate apoptosis-related proteins. Bortezomib also known as bortezomib, a proteasome inhibitor that has been approved by the food and Drug Administration for treatment of patients with multiple myeloma, and many clinical trials are ongoing to examine to the efficacy of bortezomib for the treatment of other malignancies. Bortezomib has been shown to induce apoptosis and inhibit cell growth of many cancer cells. In current study, we determine whether bortezomib induces cell death/apoptosis in CML.
Material and Methods
Reagents
Bortezomib and antibodies against caspase-3, caspase-9, PARP, p27, GAPDH were obtained from Santa Cruz Biotechnology Inc (USA). Antibodies against SKP2 and caspase-8 were obtained from Cell Signaling Technology, Inc USA) Arsenic trioxide (As2O3) and cyclohexamide were purchased from Sigma. Chronic myelogenous leukemia cells (CML) cell lines: K562, LAMA and AR230 cell lines were cultured in RPMI 1640 medium supplemented with 10? (v/v) fetal bovine serum (FBS), 100 U/ml penicillin, 100 U/ml streptomycin at 37°C in an humidified atmosphere containing 5? CO2. Proliferation assays: 104 cells were incubated in triplicate in a 96-well plate in the presence or absence of indicated test doses of Bortezomib in a final volume of 0.20 ml for 24 hour. The ability of Bortezomib to suppress cell growth was determined by MTT cell proliferation assays.
Apoptosis
CML cell lines were treated with bortezomib in different conditions as indicated in each experiment for 24 hours. Apoptosis was determined by flow cytometry using Annexin V (Molecular probes, Eugene, OR), PI staining for cell cycle analysis and DNA laddering using an apoptotic kit (Roche, Indianapolis, IN).
JC1 staining
1 × 106 cells were treated with different doses of bortezomib for 24 hours and stained with 10 mMol JC1 (Alexis corp., San Diego, CA) and measured by flow cytometry.
Western blot
Equal amounts of protein were separated by SDS-PAGE, transferred to PVDF membranes and probed with specific antibodies. Cytochrome c release from mitochondria: 20 μg of proteins from the cytosolic fraction were analyzed by immunoblotting with a specific antibody.
Results
Our data showed that proteasome inhibitor bortezomib decreased cell viability as well as induced apoptosis in a dose-dependent manner in a panel of CML cell lines. S-phase kinase-associated protein 2 (SKP2) is an F-box protein that targets cell cycle regulators including cyclin-dependent kinase inhibitor p27Kip1 via ubiquitin-mediated degradation. SKP2 is overexpressed in CML cells, and Bortezomib treatment of these cells resulted in down-regulation of SKP2 and stabilization of p27Kip1. Furthermore, bortezomib-treatment of CML cells led to the loss of mitochondrial membrane potential with the subsequent release of cytochrome c from mitochondria into the cytosol. Cytochrome c release caused activation of caspase-3 followed by polyadenosin-5-diphosphate-ribose polymerase (PARP) cleavage. Finally, we assessed effects on leukemic progenitors (CFU-L) using clonogenic assays in methylcellulose. The treatment of CML cells with bortezomib resulted in inhibition of CFU-L colony growth of leukemic precursors in the CML cell lines. We also provide evidence that co-treatment of chronic CML cells with bortezomib and arsenic trioxide (As2O3) potentiated the inhibition of cell viability. In addition clonogenic assays in methylcellulose demonstrate potent suppressive effects of the combination of these agents on primitive leukemic progenitors derived from CML cells.
Conclusion
Altogether, our results suggest that bortezomib-mediated downregulation SKP2-induced efficient apoptosis in CML cells and exhibited antileukemic effects. Furthermore, co-treatment of CML cells with bortezomib and As2O3 potentiated anti-cancer effects. These data suggests that proteasome-ubiquitin pathway may be a potential target for therapeutic intervention for treatment of CML.
Keywords
Proteasome Pathway, CML, Apoptosis
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Vasoactive Intestinal Peptide Protects Cancer Stem Cells from Apoptosis by Activating Multiple Signaling Pathways
Background
Vasoactive intestinal peptide (VIP) is a neuropeptide that controls the proliferation, differentiation, and survival of various normal and cancer cells. Elevated expression of VIP receptors has been found in prostate and breast cancer; and antagonists of VIP inhibit the growth of cancer xenografts. We previously reported the cytoprotective mechanisms activated by VIP in differentiated cancer cells that form the bulk of tumor, however, the signaling mechanisms activated in cancer stem cells (CSC) have not been identified.
Objectives
The objectives of this study are to unravel the anti-apoptotic mechanisms activated by VIP in CSC, and examine if these pathways converge on a pro-apoptotic protein BAD. Identification of mechanisms responsible for survival of CSC will help design new therapeutic strategies that target and eliminate CSC.
Methods
Sphere formation assay and Fluorescent Activated Cell Sorter (FACS) were used to enrich and purify CSC (CD44+/CD24 − and/or CD133+) from prostate and breast cancer cells. Apoptosis of CSC was induced by inhibiting the survival kinase PI3K/Akt using pharmacological inhibitor LY294002. Caspase assay, FACS and soft agar colony formation assays were used to measure the cytoprotective effects of VIP. Western blot was used to address the phosphorylation and quantification of various signaling proteins.
Results and conclusion
Cancer stem cells were sorted to a purity of 95% and characterized for their stemness phenotype. While LY induced apoptosis in CSC by dephosphorylating BAD, VIP rescued by restoring the BAD phosphorylation at Ser112. VIP activated two non-redundant antiapoptotic signaling pathways that converge on BAD. One signaling pathway operate via activation of protein kinase A (PKA), whereas the other pathway predominately relies on MEK/MAPK pathway. Both pathways partially control BAD phosphorylation at Ser112. Either of these pathways is sufficient to protect CSC from apoptosis, thus both have to be inhibited to block cytoprotective effects of VIP. Using phosphorylation deficient mutant BAD, we show that the BAD phosphorylation is essential for the VIP-induced survival of CSC. Taken together, our findings suggest the potential usefulness of VIP receptor inhibition, and that BAD plays a critical role in CSC and thus targeting BAD might be an attractive strategy for development of novel therapeutics.
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Depot-Specific Differences in the Effects of IGF-1, HGF and VEGF on Human Preadipocytes Proliferation and Differentiation
Authors: Mohamed A Elrayess, Shamma Al-Muraikhi, Wael Kafienah, Fatima Al-Khelaifi and Moataz BashahIntroduction
Accumulating evidence suggests that adipose tissue is a dynamic organ that undergoes expansion and contraction in response to energy demands and obesity-associated tissue injury. The dynamic nature of the adipose tissue is achieved via changes in both size and number of mature adipocytes through adipocyte hypertrophy and preadipocytes proliferation and differentiation respectively. These changes are mediated through various growth factors and cytokines secreted by cells within the adipose tissues (Spalding et al. 2008). Hypertrophied adipocytes secrete cytokines such as IL-6 that can trigger macrophage infiltration and secretion of IL-1β, TNFα and IL-8 (Bjorntorp 1974; Kobashi et al. 2009), causing impairment of preadipocytes differentiation and induction of insulin resistance (Gustafson et al. 2007; Veilleux et al. 2009). TNFα-stimulates HGF release from fibroblasts and monocytes within the adipose tissue serving as a potent mitogenic factor (Bell et al. 2008). Mature adipocytes secrete IGF-I that plays a major role in preadipocyte differentiation (Bluher et al. 2005). Other growth factors such as VEGF were suggested to regulate the balance between osteoblast and adipocyte differentiation from pre-preadipocytes (mesenchymal stem cells) (Liu et al. 2012). Preadipocytes exhibit unique depot-specific characteristics that persist in expanded in vitro such as different size, lipoprotein binding, fatty acid transfer, protein secretion and response to insulin and lipolytic agents (Tchkonia et al. 2013). Cultured human abdominal subcutaneous preadipocytes (SC) accumulate more fat and exhibit a greater expression of adipogenic transcription factor than omental preadipocytes (OM) (Tchkonia et al. 2005). SC adipocytes serve as the first optimal fat storage choice (Tchkonia et al. 2013). Obesity causes impairment in SC fat storing capacity as a result of reduction in the number of differentiating preadipocytes and hypertrophy of mature adipocytes (Isakson et al. 2009; Spalding et al. 2008). This leads to expansion of visceral fat, including OM depot, with ectopic fat accumulation in the liver, skeletal muscle and heart (Okuno et al. 1998; Tchkonia et al. 2010). Visceral and ectopic fat accumulation results in further augmentation of insulin resistance in these tissues (Petersen and Shulman 2006), which is associated with a depot-dependent (OM > SC) IL-6 release in vivo and ex vivo (Fried et al. 1998; Mohamed-Ali et al. 1997).
Methods
In this study we compared the secretion of IL-6, IL-1β, TNFα and IL-8 in 15 paired subcutaneous (SC) and omental (OM) preadipocytes cultures expanded from stromal-vascular fraction (SVF), isolated from morbidly obese patients (8 males and 7 females) undergoing weight reduction surgery at Hamad Medical Corporation (HMC). We further evaluated the effect of IGF-1, HGF and VEGF on preadipocytes proliferation and differentiation in paired SC and OM preadipocytes cultures isolated from 3 randomly selected female subjects matched for age and BMI. For this purpose, SVF-derived cells (passage 1–2) were grown in stromal medium overnight then incubated in differentiation medium for 7 days, followed by 12 days in maintenance medium as previously described (Lee et al. 2012). Accumulated levels of secreted IL-6, IL-1β, TNFα and IL-8 in the last four days of differentiation were measured in media supernatants using Inflammatory Cytokine Human Magnetic 5-Plex (Life Technologies) according to manufacturer's instructions and assessed by Luminex Flexmap 3D using xPONENT® software. For experiments investigating the effect of growth factors on preadipocytes proliferation and differentiation, cells were grown as above in the absence or presence of 200 ng/ml IGF-1, 100 ng/ml HGF or 50 ng/ml VEGF for the entire differentiation and maintenance periods (once every 3–4 days). To assess proliferation and differentiation capacity, cells were fixed with 4% formalin for 10 min, stained with DAPI and subsequently with Lipidtox (Life Technologies) for 20 min. Total number of nuclei (DAPI, indicator of proliferation) and differentiated adipocytes (Lipidtox positive cells) were scored in 20 fields per well by ArrayScan XTI (Thermo Scientific) using automated spot detection module. Differentiation capacity was assessed by calculating the ratio of Lipidtox positive cells/total number of stained nuclei and presented as a percentage (adipogenic capacity). All protocols were approved by Institutional Research Boards of ADLQ and HMC (SCH-ADL-070, SCH-JOINT-111).
Results
Levels of secreted IL-6, IL-1β and IL-8 were significantly higher in OM preadipocytes compared to their SC-derived counterparts (Fig. 1), whereas secreted TNFα levels were below the level of detection. Compared to their age and BMI matched males counterpart, SC preadipocytes from females exhibited significantly higher levels of secreted IL-6 by 49.2% (p = 0.05) (Table 1) with no significant differences in other measured cytokines in either tissue. Treatment of SC and OM preadipocytes with IGF1, HGF and VEGF increased subcutaneous preadipocytes proliferation by 20% (n = 3, p ≤ 0.01) but had no significant effect on omental preadipocytes (Fig. 2). In contrast, IGF1 increased omental preadipocyte differentiation by 50% (p = 0.02), whereas neither HGF nor VEGF exhibited significant effect on subcutaneous or omental preadipocytes differentiation (Fig. 3).
Discussion and Conclusion
Our data suggest that elevated levels of secreted IL-6, IL-1β and IL-8 in OM compared to SC expanded cultures confirm the greater inflammatory nature of OM-expanded in vitro cultures shown previously in vivo and ex vivo (Fain 2006; Fried et al. 1998; Maury et al. 2007). The greater IL-6 secretion in female SC preadipocytes may suggest a role of sex steroid hormones (estrogen and androgen), but mechanisms for depot-specific differences remain poorly understood (Lee et al. 2013). Previous data has shown that preadipocytes are potent sources of growth factors such as VEGF, HGF, and IGF-1 in response to inflammatory mediators via a p38 MAPK-dependent mechanism (Wang et al. 2006). Investigation of the function of these growth factors on proliferation and differentiation of SC and OM expanded cultures confirmed the mitogenic nature of all these growth factors in SC but not in OM preadipocytes, while only IGF-1 enhanced differentiation of OM preadipocytes. These depot-specific differences in preadipocyte proliferation and differentiation in response to various mitogenic and adipogenic factors may be explained by their different cellular composition and physiological role (Lee et al. 2013). The molecular mechanisms underlying these differences and their impact on metabolic syndrome remain elusive. The contribution of secreted cytokines and growth factors on depot-specific differences and metabolic complications associated with central obesity may shed some light on these mechanisms.
Acknowledgment
This research was sponsored by Qatar National Research Fund (QNRF), Grant number NPRP6-235-1-048.
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Statins Formulary Selection in Qatar, Based on Multi-Indication Pharmacotherapeutic Multi-Criteria Scoring, and Clinician Preference
Purpose
Statins selection for the largest hospital formulary in Qatar is not systematic, not comparative, not cost saving, and does not consider the multi-indication nature of statins. There are no literature reports of multi-indication based comparative scoring models of statins, or reports of statins selection criteria weights that are primarily based on local clinicians' preference and experiences. The study sought to comparatively evaluate statins for first-line therapy in Qatar, and to evaluate the economic impact of this.
Methods
An evidence-based, multi-indication, multi-criteria pharmacotherapeutic model was developed for the scoring of statins. This was from the perspective of the main healthcare provider in Qatar, the Hamad Medical Corporation (HMC). Literature and an expert panel informed the selection criteria of statins. Relative weighting of selection criteria was based on the input of the relevant local clinician population. The targeted clinician population was of all specialists and consultants in the departments of cardiology, internal medicine, and nephrology in HMC. Statins were comparatively evaluated according to their total pharmacotherapeutic selection scores, with only the statins that score more than 95% of the highest scoring statin getting recommended for formulary inclusion. Remaining statins that score more than 90% of the highest scoring statin will also be considered, but as non-formulary alternative. The remaining did not progress. Sensitivity analyses were conducted to investigate the robustness of the study outcomes against variations in study inputs. These included deterministic, probabilistic as well as scenario analyses, via @Risk-5.5 Palisade, USA.
Findings
This is the first literature report to inform formulary inclusion in Qatar or the Middle Eastern region, and the first in literature that comparatively score statins based on multiple indications, as compared to the typical pharmacoeconomics evaluation method, comparing differences in cost and effect between two statins for an indication of interest to guide the formulary inclusion decisions. With 95% confidence interval and 5% margin of error, the scoring model was successfully developed. Selection criteria comprised 28 sub-criteria, under the following main criteria: clinical efficacy, best publish evidence and experience, adverse effects, drug interaction, dosing time, and fixed dose combination availability. Outcome measures of multiple indications related to effects on LDL-cholesterol, HDL-cholesterol, triglyceride, total cholesterol, and c-reactive protein. Atorvastatin, pravastatin and rosuvastatin exceeded defined pharmacotherapeutic thresholds. Atorvastatin and pravastatin were suggested for first-line use in HMC, followed by rosuvastatin as a non-formulary alternative. Fluvastatin and simvastatin were recommended for exclusion from any hospital drug lists. This was estimated to produce 17.6% in cost savings, reducing the annual statins expenditure from QAR 152, 118, 200 to QAR 125, 367, 620;. Sensitivity analyses confirmed the robustness of the evaluation outcomes. The comparative criterion that affected the study conclusion was the availability of fixed dose combination. The possibility of 30% non-formulary drug utilization scenario resulted in an annual expenditure of QAR 129, 654, 180, still associated with up to 14.8% cost saving.
Implications
Incorporating a comparative evaluation of statins in Qatari practices, based on a locally-developed, transparent, multi-indication, multi-criteria scoring model, has the potential to considerably reduce the expenditure on statins. Atorvastatin and pravastatin should be the first-line statin therapies in the main Qatari healthcare provider, with rosuvastatin as an alternative. Important, is that the study results are consistent with published clinical guidelines, as well as with practices in overseas.
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Concordance of PAP Smear, Colposcopy and Histopathology in Patients with Cervical Intraepithelial Neoplasia
More LessObjective
To evaluate the concordance of Pap smear, Colposcopy and histopathology in patients with cervical intraepithelial neoplasia (CIN) in a local tertiary care hospital.
Design
Retrospective descriptive study.
Materials and methods
All patient with CIN undergoing LLETZ during the period from January 2007 to July 2013 were included in the study. Case records were reviewed regarding demographics and clinical data, Pap smear reports, colposcopy findings and histopathology (HPR) reports following colposcopically directed cervical biopsy (CDB) and that following Large Loop excision of Transformation zone (LLETZ).
Results
patients with CIN undergoing LLETZ were included. Agreement between Pap smear and HPR was 96.2% with sensitivity of 80.6% and specificity of 60%. Agreement between CDB and HPR was 86.4% for high grade and only 33.3% for low grade lesions. Level of concordance of Pap smear with CDB was 96.2% for high grade and only 50% for low grade lesions.
Main Outcome Measures
Agreement between Pap smear, colposcopy, CBD and HPR.
Conclusion
Pap smear and CDB are complimentary to each other, and each cannot be used independently. LLETZ improves the yield of high grade lesions and detecs minimally invasive cancer which could be missed by CDB.
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Indications for Intensity Modulated Radiation Therapy (IMRT) for the Treatment of Large Left Breast Volumes
Purpose
The purpose of our study is to determine indications for the use of an IMRT technique for large volume size left breast cancers.
Materials/methods
We ran a retrospective review of Stage 0-III left breast cancers with large volumes treated with conservation therapy from April 2011 to January 2012 at the Radiation Oncology Department at the National Center for Cancer Care and Research in Doha, Qatar. Computer tomography simulation was used to design fields. Patients were treated supine and received 2 Gray (Gy) fractions to 50 Gy to the whole breast followed by an electron or 3D boost of 16 Gy using 6, 15 or mixed 6/15 megavoltage photons. A variety of techniques including electronic compensation (E-comp), field in field (FinF), and 3D with wedges (3DW) were compared. Dosimetric evaluations were made of the breast planning target volume (PTV), lung, heart and contralateral breast for each technique. RTOG skin toxicity grades, treatment data, and breast volumes were obtained by chart and treatment plan review. We further continued dose volume data evaluation using the following dosimetric parameters: uniformity index (UI), conformity index (CI) and homogeneity index (HI) parameters and radiobiological models to further assess our results.
Results
A total of 30 patients were treated, and all patients received chemotherapy. Volumes ranged from 718–3296 cc (ave.1483.33 cc). Separations ranged from 20–35 cm (ave. 23.87 cm). During treatment there were 63% Grade 1, 37% Grade 2, 0% grade 3/ 4 RTOG skin toxicity; no treatment breaks recorded. E-comp plans resulted in better coverage of the 95% volume (V95) coverage with improved dose homogeneity of the PTV. This was seen especially in breast volumes > 2400 cc. Also, there was a reduction in V110 and V115 in the FinF and Ecomp plans compared to conventional 3DW technique. In terms of dose to the contralateral breast Ecomp had a slight advantage (1%). No significant difference seen in the LT lung V20 and Heart V25 and Contralateral Breast V5 between Ecomp and FinF which was better than 3DW. The average dose coverage values of PTV with ecomp and FinF plans were comparable, and achieved an overall better target coverage than 3D plans. Forward planning IMRT gave higher conformity index values of 0.66 ± 0.07 and 0.67 ± 0.07 for ecomp and FinF plans respectively as compared to 0.65 ± 0.07 for 3D-CRT plans. The Homogeneity (HI) and Uniformity Index (UI) values favored ecomp and FinF values compared to 3DCRT with average HI values of 0.27 ± 0.16 for ecomp, 0.31 ± 0.14 for FinF, and 0.38 ± 0.33 for 3D-CRT. And uniformity index values of 1.11 ± 0.04, 1.13 ± 0.05 and 1.26 ± 0.39 for ecomp, FinF, and 3D respectively.
Conclusions
For women with large breast size Ecomp planning significantly improved dose homogeneity decreased acute skin toxicity and less hot spot value. These factors grow more important in women with large breasts, who may experience more Grade 3/4 skin toxicity and increased pain resulting in a lower quality of life with standard tangential fields. Therefore, we suggest using an Ecomp technique for left-sided breast cancer in the following situations: 1) breast volume >1500cc 2) separation of >25 cm or 4) combination of large volume/cup size with separation > 22 cm or vice versa, 5) the use of mixed beams. For patients with large breast volumes supine IMRT treatments can provide good dose homogeneity, spare dose to critical structures, and may be preferable to the prone breast irradiation. Conformity Index, Homogeneity Index and Uniformity Index are objective tools for evaluating dose coverage for breast planning. This study showed that a better target coverage for ecomp and FinF plans over 3D-CRT with a slight advantage of ecomp over FinF with large breast volumes. Furthermore, we will assess the potential advantage of IMRT over 3D planning using radiobilogical models.
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