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Qatar Foundation Annual Research Forum Volume 2011 Issue 1
- Conference date: 20-22 Nov 2011
- Location: Qatar National Convention Center (QNCC), Doha, Qatar
- Volume number: 2011
- Published: 20 November 2011
61 - 80 of 281 results
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Identification and Mapping of Locus on the Long Arm of Chromosome 4 that is Associated with Mental Retardation and Optic Atrophy in a Qatari Aamily with Undelineated Autosomal Recessive Disease
AbstractBackground: Autosomal recessive diseases are the single largest category of single-gene disorders among Arab population. A Qatari family includes 6 individuals from 3 related consanguineous sibships, with mental retardation. The clinical picture comprised significant mental retardation, retinal degeneration, optic nerve atrophy, and ataxic gait. They suffer also from oedemal puffiness of hands and feet. All parents and the unaffected family members are healthy.
Objective: Identification of undelineated autosomal recessive disorders among families in the Arab world, especially in the Gulf region.
Methods: Whole genome genotyping was done by (Illumina 300Kb SNPs), followed by homozygosity mapping and linkage analysis. Targeted resequencing of candidate genes was preformed within the linked loci.
Results and conclusions: Homozygosity mapping revealed a 19.6 MB segment in the long arm of chromosome 4 flanked by rs4345237 (4q12) and rs422140 (4q13.3). This interval contains more than 100 genes, none of which has been implicated in any of the above mentioned phenotype so far. Candidate genes were selected and we are in the process of sequencing them. In addition, whole exome sequencing will be performed to expedite the mutation identification.
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The Generation of a Novel Chimeric Antigen Receptor for Cancer Immunotherapy
More LessAbstractT-cells genetically modified to express a chimeric antigen receptor (CAR) against a tumor associated antigen are attractive anti-cancer therapeutic agents. The 5T4 cell surface oncofoetal antigen is an attractive target antigen for cancer immunotherapy as it is expressed by a wide spectrum of cancers including gastric, ovarian and colorectal while showing limited expression in normal adult tissues. Previously it was shown that human and murine T-cells engineered to express human 5T4 specific CAR can specifically lyse human 5T4-expressing tumor targets in vitro and in vivo, respectively. This study aimed to isolate single chain variable fragments (scFvs) specific for murine 5T4 (m5T4) and to examine their efficacy in the context of CAR in a fully autologous model. Screening four novel hybridoma cell-lines producing anti-m5T4 monoclonal antibodies to clone the scFv yielded one functional m5T4-specific scFv from the hybridoma cell-line P1C9. The P1C9 scFv expressed as a fusion protein with the Fc domain of human IgG significantly labels m5T4-expressing targets. Murine T-cells modified to express the P1C9 scFv fused to the CD3? molecule can specifically lyse target cells in vitro and result in IFN-? cytokine release, while T-cells expressing the non-signalling CAR derivative; P1C9 scFv fused to the murine MHC-I transmembrane domain, were unable to lyse m5T4-expressing tumor targets. On-going experiments aim to test the efficacy and assess the toxicity of m5T4-specific CAR against m5T4-expressing tumor models in vivo. This model will allow further understanding of how gene-modified T-cells function in an autologous setting with the aim to improve human T-cell based cancer immunotherapy.
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Analyzing the Synergistic Effects of Retinoic Acid and TRAIL on the Induction of Apoptosis in Oral Squamous Cell Carcinoma-Derived Cell Lines
Authors: Ahmed Alsaei, Kwame Osei-Sarfo and Lorraine GudasAbstractHead and neck squamous cell carcinomas (HNSCCs) develop in the mucosal linings of the upper aerodigestive tract and are the sixth leading cause of cancer worldwide. They are initiated by tobacco and alcohol consumption, and by infection with high-risk types of human papillomavirus (HPV). The neoplastic process begins with the normal epithelium progressing through hyperplasia to dysplasia to carcinoma in situ and invasive carcinoma.
Retinoic acid (RA) and its derivatives (retinoids), metabolites of vitamin A, have been recognized as a group of cancer chemopreventive and therapeutic agents, because of their ability to induce differentiation of various types of stem cells and arrest of cellular proliferation. Recent studies show that RA sensitizes colorectal cancer cells to apoptosis by inducing the proapoptotic ligand, TNF-related apoptosis inducing ligand (TRAIL). RA increases the expression of TRAIL receptors, Death Receptors 4 & 5 (DR4/5), while suppressing TRAIL nonfunctional receptors, Decoy Receptors 1 & 2 (DcR1/2) in colorectal cancer cells. In this study, we analyzed the synergistic effects of RA and TRAIL on the induction of apoptosis in human oral squamous cell carcinoma derived cell-lines.
The human HNSCC cell lines, SCC-15, SCC-25, and OKF6/hTERT-1 (an immortalized oral mucosa cell line), were treated either with RA, TRAIL, or RA and TRAIL for 7 days. These treated cells were then analyzed for changes in cell proliferation (by growth curves), gene expression (by semi-quantitative PCR), and markers of apoptosis and differentiation (by Western blot). It was expected that cellular proliferation and expression of DcR1/2 would be reduced in cells treated with RA and TRAIL, while expression of DR4/5 and markers of apoptosis (PARP cleavage) would be higher in RA and TRAIL-treated cells. We show that RA and TRAIL decreased cellular proliferation in the OKF6/hTERT-1 cell-line; however, RA in combination with TRAIL did not result in a significant change in SCC-15 or SCC-25 cell-lines. In addition, Western blot results show that RA and TRAIL increased the cleavage of PARP in the SCC-25 cell-line. Finally, as expected, RA decreased the expression of Oct4, a stem cell marker, and increased the expression of E-cadherin, an epithelial cell marker.
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Autism in Qatar: Quality of Life of the Caregivers
Authors: Sara Hayder Ahmed, Muna Al-Ismail, Nadir Kheir, Ola Goneim, Amy Sandridge and Fadhila Al-RawiAbstractBackground: Caring for an autistic child places significant stress on the lives of family members. To date, no study has evaluated how looking after a child with autism affects quality of life (QoL) of caregivers in Qatar or the Gulf country region. Our study is aimed at quantifying the health-related QoL of caregivers of children with autism in Qatar.
Methods: We recruited two groups of caregivers of children between 3 to17 years old. The first group was formed of caregivers of children with autism from two developmental paediatric rehabilitation clinics, and the second group was formed of caregivers of typically-growing children and who were visiting a family clinic for routine medical check-up. Demographic information of all caregivers and children were collected. The Arabic version of the Short Form-36 (SF-36), which is a generic type questionnaire, was administered to caregivers in both groups to assess QoL.
Results: A total of 98 participants consented to take part in the study. 56 were caregivers of children with autism, and 42 were caregivers of a typically-growing children. There was no statistically significant difference in QoL domains between both groups, but caregivers of autistic children rated their health as poor and likely to get worse (p=0.003). Mental health components were consistently poorer than the physical components in the autistic group, and female caregivers had poorer mental health than males in this cohort of participants (p<0.05).
Conclusion: This study provided evidence for the impact of caring for a child with autism on the life of the caregiver. However, there seems to be a need to develop condition-specific QoL questionnaires that can specifically measure QoL in caregivers of autistic children more accurately than generic questionnaires. The findings should still help health policy-makers provide more focused support to the children with autism and their families.
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The Prevalence of Obesity Amongst School Children and Adolescents in Qatar
Authors: Ladan Davallow, Hanin Abou Ayash, Iqbal El Assad and Amal KhidirAbstractIntroduction: There has been a great increase in the worldwide prevalence of childhood and adolescent obesity and secondary diseases such as diabetes mellitus type II in recent years. However, there is insufficient data regarding this topic in Qatar and the Gulf region.
Objective: To assess obesity prevalence among schoolchildren and adolescents (6–18 years) in independent schools in Qatar.
Methods: This cross-sectional study was conducted in independent schools selected by the Supreme Council of Education in Qatar. Participants were sampled from schools managed by the Ministry of Education in Qatar using a multi-stage random selection with clusters being school type (primary, preparatory, secondary), grade, class section and gender of students. Two questionnaires translated to Arabic (one for grade 4 and one for grade 8 and 11) were used, and weight and height were measured using a portable stadiometer. Ethical board approvals as well as parental permission and students’ assent were obtained.
Results: Data was collected from 19 schools (7 elementary, 6 middle and 6 high schools). Total of 480 children and 1,333 adolescents were enrolled. Height and weight were measured, and body mass index (BMI) was calculated using Center for Disease Control (CDC) guidelines. Overall prevalence of obesity among: a) Grade 4 was 23.3% (27.7% boys and 18.3% girls), b) Grade 8 was 22.4%, (22.2% boys and 22.9% girls), and c) Grade 11 was 17.5% (24% boys and 12.2% girls). Grade 4 and 11 boys were (1.7 and 2.6 times respectively) more likely to be obese than girls, while in grade 8 there was no statistically significant difference among genders. The rates of obesity for all grades were higher than the American rate of 16.9% for children between the ages of 2 to 19 years by National Health and Nutrition Examination Survey (NHANES).
Conclusion: There is a high prevalence of obesity amongst schoolchildren and adolescents in Qatar, boys more than girls. This pilot study highlights the need for a bigger scale study to further evaluate obesity among children and adolescents and start concrete interventions.
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Community Pharmacists in the State of Qatar: A Survey of their Smoking Cessation Knowledge and Educational Interests
Authors: Maguy Saffouh El Hajj, Reem R Al Nakeeb and Rajaa A. Al QudahAbstractBackground: Cigarette smoking is one of the preventable causes of ill health in Qatar. Qatar community pharmacists are in an ideal position to play an important role in smoking cessation. This role necessitates adequate smoking cessation knowledge and education. The study objectives were to assess Qatar community pharmacists' smoking cessation knowledge and to gauge their perceptions of which aspects of smoking-related education would be most interesting.
Methods: A pretested survey was used to solicit community pharmacists' anonymous responses. The survey was designed after reviewing relevant smoking cessation literature. A phone call was made to all community pharmacists in Qatar to request their participation. Interested pharmacists were sent the survey link by email or by fax. Data was descriptively analyzed using the Statistical Package of Social Sciences software version 18.
Results: Over 20 weeks, we collected 112 surveys (35% response rate). Smoking cessation knowledge was evaluated using 8 true or false questions. Thirty seven percent of respondents scored less than 60% and 13% scored more than 80%. The mean score was 61% with a standard deviation of 17%. Eighty-nine percent of respondents indicated that they have not received before any smoking cessation education. Nevertheless, at least 70% indicated that they were interested in receiving additional smoking cessation education. Respondents were mostly interested in receiving education on motivating smokers to quit and on counseling on behavioral techniques (89% and 86% respectively). Sixty nine percent indicated a preference for mailings of printed materials as method of information delivery.
Conclusion: Despite their low smoking cessation knowledge, Qatar community pharmacists are interested in receiving additional smoking cessation education. A smoking cessation education program should be offered to these pharmacists to give them the knowledge they need to be competent smoking cessation counselors.
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The Effect of Serum Lipoproteins on Amiodarone Metabolism in Cultured Primary Rat Hepatocytes
Authors: Dalia Hamdy and Dion BrocksAbstractPurpose: To examine the effect of serum lipoproteins on amiodarone (AM) metabolism in cultured primary rat hepatocytes.
Method: Primary rat hepatocytes were isolated from normal lipidemic (NL) or hyperlipidemic (HL) Sprague Dawley rats. All experimental groups were treated with AM (500 ng/mL) for 0–72h (n=18 wells for each time point). In preincubation groups, hepatocytes were pre-incubated for 24 h at 37°C with media or 5% NL or HL serum in media. After 24 h, the medium containing serum was removed and treatment was initiated with drug incubated with media alone. For serum co-incubation groups, the AM serum mixture was added to hepatocytes. Experiments were terminated at various time points by addition of 0.5 mL 1N NaOH to each well and samples collected in Eppendorf tubes and stored at −30°C until analyzed for the concentration of AM remaining.
Results: In absence of serum, there was no significant difference in the area under the % AM recovering time curve (ARE) between the NL and HL hepatocytes over the time period from 0–72h. However, ARE from 0–24h in HL rat hepatocytes (1630±39.3 % h) was significantly higher than that of the NL rat hepatocytes (1409±57.2 % h). The co-incubation of NL serum led to a significant increase in the ARE in the NL hepatocytes compared to the incubations in the absence of the serum. The addition of HL sera, whether it be as pre- or co-incubations, led to significant increases in the ARE compared to media only and NL serum incubations. In addition the co-incubated NL hepatocytes had significantly higher (6288% h) ARE when exposed to HL serum than the pre-incubated (4552 % h) cells.
Conclusion: Serum pre-incubation decreased the amiodarone metabolism in cultured primary hepatocytes due to down regulation of CYP enzymes. Serum co-incubation resulted in significantly lower AM metabolism than the corresponding pre-incubation groups due to a decrease in AM unbound fraction. The hypothesized enhanced association of drug with VLDL and LDL fractions in co-incubation with HL serum compared to NL serum was not sufficient to increase the uptake of the drug into hepatocytes and increase the drug metabolism significantly between those two groups.
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Mechanistic Release Study of Water Soluble Drugs from Poly (Dimethylsiloxanes) Elastomeric Matrices
Authors: Husam M Younes, Sandi Ali-Adib, Nazish Khan, Kawthar Tawengi and Dana BakdashAbstractIntroduction: Controlled drug release from implantable silicone elastomers was reported to occur mainly via the osmotic rupture release mechanism. In this work, we are attempting to determine the effects of drug volumetric loading, particle size, device shape, and dissolution media on the release rate of the water-soluble osmotically active drug, Papaverine Hydrochloride (PH) from silicon elastomers.
Materials and Methods: Medical grade silicone (Sylgard kit) was purchased from Dow Corning. All other chemicals were purchased from Sigma-Aldrich and used as received. The release profiles from devices of three geometries (cylinders, cubes and tablets), of different drug particle sizes (< 45μm, 63–125μm or 125–250μm) in different dissolution media (phosphate buffered saline, distilled water, and 3% sodium chloride solution) were investigated. The effect of degree of elastomer crosslinking and the percentage of volumetric loading of the osmotic excipient and pore forming agent, Trehalose, on the release rate were also investigated. The drug fraction released of PH was analyzed using ultraviolet spectrophotometric analysis. Data obtained was then plotted as cumulative percentage release against time and then further analyzed.
Results and Discussion: Contrary to previous reports, devices formulated with the same volumetric loading and smaller drug particles sizes released drug faster than those devices with a larger particle size. The drug release from tabular implants was of faster rate when compared to cylindrical and cubic devices. Contrary to the expected, higher drug release rate was also observed from cubic elastomeric devices with higher crosslinking density. In addition, the release profiles demonstrated that osmotic release was the predominant mechanism governing the release of PH from silicone elastomers.
Conclusion: Our results show that osmotic rupture is the predominant mechanism of release of PH from silicone elastomer. Further studies must be conducted to confirm the effect of the elastomer crosslinking density on drug release rate.
Acknowledgements: This report was made possible by a UREP award [UREP 07-120-3-027] to HM Younes from the Qatar National Research Fund (a member of The Qatar Foundation). The statements made herein are solely the responsibility of the authors.
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Newborn EEG-Based Automatic Abnormalities Diagnosis Scheme using a Time-Frequency & Image Processing Approach
Authors: Larbi Boubchir and Boualem BoashashAbstractElectroencephalogram (EEG) is a representative signal containing information of the electrical activity generated by the cerebral cortex nerve cells; it has been the most utilized signal to clinically assess brain activities, and to detect abnormalities such as epilepsy. However, the manual detection of such brain abnormalities as epilepsy or seizure includes visual scanning of EEG recordings, which is very time consuming especially in the case of long recordings. So, the EEG signal parameters are extracted and analyzed using computer based digital signal processing techniques are highly useful in diagnostics and more suitable for detecting and classifying EEG abnormalities.
This work aims to develop novel features extracted from the time-frequency distribution (TFD) of the EEG signals including newborn for the purpose of classifying these signals in three possible categories i.e.: 1) acquired from healthy subjects, or 2) epileptic patients during normal brain activity, or 3) epileptic patients while experiencing seizures.
The proposed method for classifying EEG signals includes the three following stages:
- Time-frequency decomposition of EEG signal using the quadratic time-frequency representations (TFR).
- Features extraction from TFR.
- Features classification in order to assign the signal to one abnormality class: mild, moderate or severe abnormality.
The experimental results show that the proposed method provide better results using certain types of Quadratic TFDs such as the Modified-B distribution or the Spectrogram distribution in combination with the support machine classifier to detect and classify the epilepsy. We also found that the performance of this method is not related only to the TFR and the classifier choice but is also dependent on the choice of significant features. We are currently developing new image processing techniques to extract new features from the TFR considered as an image. The design is based on the use of edge and contour detection, and, segmentation methods in order to define new features such as the number, the shape and the localization of the components.
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Design of Quadratic Time Frequency Distribution and Application to the Analysis and Detection of Fetal Movements
Authors: Taoufik Ben Jabeur and Boualem BoashashAbstractBackground: Fetal movements are clinically correlated to fetal wellbeing. Ultrasounds are the most accurate measurements of the fetal movement but expensive and intrusive. To avoid these constraints, Fetal activity is captured through data acquired using low cost and nonintrusive accelerometer . Time-frequency distributions (TFDs) are often used to represent the energy, temporal and spectral characteristics of non-stationary signals in the time and frequency plane.
Many quadratic TFDs were proposed in the literature such as Wigner-Ville distribution, Spectrogram, B-Distribution, Choi-Williams , etc. The drawbacks of the majority of these techniques is that only a few parameters can be modified in the kernel, generally the lag and Doppler parameters, so that they cannot be easily adapted to the data.
Objectives: This work aims at designing a new kernel with several parameters that leads to a higher resolution time frequency representation (TFR) of the signal, therefore improving the characteristic of the fetal movement.
Methods: The proposed TFD can be considered as an extension of the Gaussian TFD (also called Choi-Williams distribution). The kernel function of the proposed kernel is given by the sum of the weighted derivative Gaussian TFD (refer to the equation).
Results and Conclusion: The weighted parameters in the above formula can be estimated by maximizing the concentration of the instantaneous frequency. The resulting TFD is compared with other methods and applied to the analysis and classification of the fetal movement data recorded by the accelerometers. The results obtained indicate that the proposed time-frequency methodology allows the detection of fetal movement data recorded by accelerometers.
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Newborn EEG Seizure Detection Using Time-Frequency Matched Filtering
Authors: Boualem Boashash and Ghasem AzemiAbstractBackground: The analysis of Electroencephalography (EEG) signals acquired from epileptic babies shows that seizures can be modeled as piecewise linear frequency modulated (LFM) signals. This fact motivated the use of time-frequency matched filters (TFMFs) for seizure detection in newborn EEG. A TFMF is characterized by a unique test statistic, which is found based on the time-frequency (TF) correlation between the signal under analysis and a template. The test statistic is compared with a threshold to determine the presence or absence of the template in the signal under analysis.
Objectives: We present two seizure detection algorithms based on the general class of TFMFs and an improved algorithm in the ambiguity domain and evaluate their performance using real EEG signals.
Methods: The method includes the following stages:
Based on TF analysis of newborn EEG, we create a template set containing M piecewise LFM signals with L pieces and slopes.
We define test statistics based on the TF correlation between the EEG signals under analysis; we use the Wigner-Ville distribution (WVD) and other quadratic Time-Frequency Distributions.
The test statistics are compared with a predefined threshold.
Results: We evaluated the performance of the proposed method using a database of newborn EEG signals. For each method, we found the area under the receiver operator characteristic curve (AUC) as the performance criteria. All the methods detected seizure accurately with AUC more than 0.9.
Conclusions: This work shows that TFMFs can detect seizures in newborn EEG with a very high accuracy. The optimization of the parameters of the TFDs and the use of fast and memory efficient algorithms for computing TFDs can improve the performance of the methods.
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Caring for a Child with Autism; Burden and Quality of Life of the Caregivers in Qatar
Authors: Nadir Kheir, Ola Ghoneim, Amy L Sandridge, Muna Al-Ismail, Sara Hayder and Fadhila Al-RawiAbstractIntroduction: Autism spectrum disorder (ASD) affects children at around the age of 3 years old and last throughout the person's lifetime. ASD imposes great burden on the family, and forces family members to considerably modify their daily lives to suit their reality with autistic child(ren). To our knowledge, no previous research assessed the burden of ASD on the lives of parents/caregivers of autistic children in Qatar or the Gulf region.
Methods: Caregivers of a child with autism between 3–17 years were recruited from children rehabilitation clinics. The control group was represented by caregivers of a typically-growing child visiting a primary health care facility for a routine medical examination. Data collected from both groups included demographic information of caregivers and children and quality of life information. The Lebanese Arabic version of the Short Form-36 (SF-36) was used to assess quality of life.
Results: Children in the AG spent more time indoors, watching TV, or sleeping than children in the control group (p←0.05). Around 40% of caregivers in the AG said they would encourage their child to get married and become parent when s/he grows up. Half of the sample in the AG utilizes special education classes and other facilities, and the remaining half has access problems. There was no statistically significant difference between quality of life domains between the two groups of caregivers, but caregivers of autistic children rated their health as poor and likely to get worse (p=0.003). However, mental health components were consistently poorer in the AG compared to the physical components, and female caregivers also had poorer mental health than males in this cohort of participants (p<0.05).
Conclusion: This study provided evidence for the impact of caring for a child with autism on the life of the caregiver. The findings should help health policy-makers provide more focused support to the children with autism and their families.
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Medications in Qatar's Homes: What are They and Where Are They?
Authors: Nadir Kheir, Maguy El Hajj, Karry Wilbur, Rihab Kaissi and Adil YousifAbstractBackground: Drug therapy is the most used intervention for the treatment and prevention of diseases. However, if used inappropriately, drugs can cause more harm than good. Improper drug storage and disposal can have direct impact on public safety, the environment, and healthcare services. No previous studies have examined how medications are stored, used or disposed-off in Qatari homes.
Objectives: To explore how medications are stored in Qatari homes, and to identify how unwanted medications are disposed of.
Methods: This was cross-sectional, descriptive, and epidemiological study. A list of randomly selected telephone numbers was generated from Qatar's telephone directory. Individuals answering calls were provided with the study objectives, and asked if they wished to participate. Those who offered verbal consent were interviewed in Arabic or English using a multi-part pre-tested survey instrument. The survey contained questions related to the participants’ socio-demographic characteristics as well as to the stored medications at home.
Results: Data were collected from a total of 49 households. The sample contained an ethnic mix of whom 28% stored medications in their bedroom, and 13% in a fridge. Most respondents disposed of unwanted medicines by throwing in the trash. The majority of respondents sought information related to drugs from doctors. Only 6% identified pharmacists as their primary source of information related to drugs. There seems to be poor or no correlation between household income and number of drugs stored or the method of disposal of medicines.
Discussion and Conclusions: The results raise concerns about how medications are stored and disposed-off in the community. The fact that no household routinely returned unwanted medications to a pharmacy for proper disposal places the environment at risk. There is need for societal awareness on the safe handling and storage of drugs in homes, and pharmacist should do more to raise awareness about their expected professional role.
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Failure and Injury Locus of Anterior Cruciate Ligament: A Finite Element Study
Authors: Abdel Magid Hamouda, Alexander D Orsi, Ashkan Vaziri and Hamid Nayeb-HashemiAbstractBackground: Anterior cruciate ligament (ACL) tears are common injuries occurring upwards of 250,000 times annually only in the U.S. These injuries create an annual billion dollar expense. It is important to understand these injury mechanisms as these injuries continue to be one of the largest problems in orthopedic sports medicine. Improved understanding of the injury mechanisms may improve prevention, rehabilitation and surgical procedures.
Objective: This study used a 3-Dimensional finite element (FE) knee joint model to investigate the combinations of movement, which cause ACL injury.
Method: Digital bone structures were created from magnetic resonance images (MRI). Ligament bundles were modeled based on the origins and insertion sites determined from MRI. Bone was modeled as rigid, and a transversely isotropic Mooney-Rivlin material was applied to the ligament structures. This study incorporates a novel approach for developing bundle specific prestrain within 3-D ligament structures. The bundles were stretched from their zero load lengths to their reference lengths, producing a strain field mimicking the in vivo strain conditions of the ACL at full knee extension. A failure locus was created by performing multiple FE simulations of knee joint motion combinations until ACL failure.
Result: The relationship between knee joint orientation and ligament rupture was plotted providing a spectrum for the propensity of ACL injury based on knee joint orientations, known as a failure locus. The locus shows which combinations of internal/external femoral rotation and varus/valgus angle cause ACL failure. The results show the posterolateral bundle more susceptible to rupture than the anteromedial bundle in 17 of the 22 simulations. The results also show 45% less varus angle needed for ligament failure relative to valgus angle. The results highlight femoral external rotation as an important factor for ACL injury as it decreases the failure angle by an average of 23% compared to femoral internal rotation.
Conclusion: These results have various clinical applications. In sports where ACL injuries are prevalent, training programs can be adapted to address the avoidance of harmful knee orientations.
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HIV Molecular Epidemiology in the Middle East and North Africa: Understanding the Virus Transmission Patterns
Authors: Ghina Mumtaz and Laith Abu-RaddadAbstractBackground: Human Immunodeficiency Virus Type I (HIV-1) is characterized by a high genetic variability. The distribution of HIV-1 subtypes in a population can help track transmission patterns and the evolution of the epidemic. The Middle East and North Africa (MENA) continues to be perceived as a region with limited HIV epidemiological data, but recent research indicates that nascent HIV epidemics appear to be emerging among high-risk groups including injecting drug users (IDUs), men who have sex with men, and female sex workers.
Objective: To review all evidence on HIV-1 subtype distribution in MENA where there remain several gaps in the understanding of the HIV epidemic.
Methods: A comprehensive systematic review of all HIV-1 molecular epidemiology data in MENA was undertaken. Sources of data included 1) PubMed, 2) country-level reports and database including governmental and non-governmental organizations publications, and 3) international organizations reports and databases.
Results: In several countries such as Lebanon, Saudi Arabia, and Yemen, a very diverse distribution of HIV-1 subtypes was observed reflecting principally travel-related exogenous exposures. A trend of a dominant HIV-1 subtype was observed in few other settings and was often linked to HIV transmission within specific high-risk core groups such as subtype A and CRF35_AD among IDUs in Afghanistan, Iran, and Pakistan; and subtype C in heterosexual commercial sex networks in Djibouti and Somalia. Subtype B was predominant in Northern Algeria, Tunisia, and Morocco, but this appeared to reflect a mix of indigenous endemic transmission and exogenous exposures of West European and North American origin.
Conclusions: Multiple introductions of HIV-1 variants due to exogenous exposures of nationals seemed common to all MENA countries, as observed from the high diversity in subtypes or the high genetic divergence among any specific subtype even if predominant. This in part reflects the high population mobility in MENA. In several countries though, epidemic-type clustering of specific subtypes suggests established or nascent HIV epidemics among classic core risk groups for HIV infection. With overall weak surveillance systems in MENA, molecular investigations could help identify the emergence of hidden epidemics among high-risk groups. HIV prevention efforts must be prioritized for these groups.
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Biophysical Properties of Xenopus TRPV6 Channel and its Regulation by TRPC1
Authors: Raphael Courjaret, Arwa Daalis, Satanay Hubrack, Shirley Haun and Khaled MachacaAbstractTransient Receptor Potential (TRP) ion channels are formed by either homomeric or heteromeric assembly of four TRP subunits that have six transmembrane domains (TM) and a P-loop located between TM5 and TM6 defining the channel pore. So far 30 different subunits classified in 6 families sharing as low as 20% homology, have been identified in mammals and about 20 in Xenopus. Although heterotetramers can be formed within a family, the assembly of subunits from members of different families was thought to be unlikely. We here propose that TRPV6 and TRPC1 subunits can co-assemble in the Xenopus oocyte. Western blots performed on naive oocytes lysates revealed that they express both TRPV6 and TRPC1 proteins. Furthermore, co-immunoprecipitation of tagged xTRPV6 and xTRPC1 proteins expressed in oocytes suggested a heteromeric assembly. In mammals, TRPV6 is mainly expressed in intestinal epithelia and in the placenta where it forms a homomeric channel with high calcium permeability whereas TRPC1 is a ubiquitous protein forming cationic channels with an unclear gating mechanism.
In oocytes, over expression of xTRPC1, as previously reported, did not induce any resting ionic current. Conversely, oocytes overexpressing xTRPV6 alone did show an inward rectifying cationic current that could be blocked by La3+ ions and Ruthenium red. As described for mammals, the xTRPV6 channel was largely permeable to calcium ions and displayed an anomalous mole fraction effect. A striking distinction with its mammalian counterpart is the high permeability of the xTRPV6 channel to Mg2+ over other divalents (Mg2+>Sr2+>Ba2+>Ca2+), the Mg2+/Ca2+ ratio being 2.08.
This high permeability to Mg2+ could be abolished by a point mutation in the P-loop (D525N) lowering the ratio to 1.18. Co-expression of xTRPC1 and xTRPV6 lead to a very strong reduction in the current amplitude and in cationic selectivity, the Mg2+/Ca2+ ratio also dropping to 1.18. Further investigations using heterologously expressed xTRPV6 and xTRPC1 in HEK293, allowing whole-cell recordings, will help us clarify the selectivity and the regulation of the channel. The potential interaction between TRPV6 and TRPC1 in mammals will also be examined using tissue extracts and selected cell lines.
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Pharmacy Students' Attitudes Toward Pharmaceutical Care in Qatar
Authors: Maguy Saffouh El Hajj, Ayat Hammad and Hebataila M. AfifiAbstractBackground: Pharmacy practice has recently shifted from medication supply to pharmaceutical care (PC). Pharmacy educators must prepare students to provide PC. Their responsibilities are not only limited to give students knowledge and communication skills but to motivate them to perform PC. The study objectives were to investigate Qatar pharmacy students' attitudes toward PC, to identify the factors that influence their attitudes toward PC, and to recognize their perceived barriers for PC provision.
Method: Qatar University college of pharmacy is the only pharmacy college in Qatar. A cross sectional survey of Qatar University pharmacy students was made. The students completed an online anonymous survey designed based on Standard Pharmaceutical Care Attitudes Survey (PCAS).Data was descriptively analyzed using Statistical Package for the Social Sciences version 18. Influence of sociodemographic characteristics on students' attitudes was assessed using Kendall's tau_b test.
Result: Over 4 weeks, 46 surveys were submitted (90% response rate). All respondents agreed that PC practice is valuable and that the pharmacist primary responsibility is to prevent and resolve medication therapy problems. Most respondents believed that PC provision is professionally rewarding (96% of respondents), and that all pharmacists should provide PC (91%). Highly perceived barriers for PC provision included lack of access to patient medical information (76% of respondents), inadequate drug information sources in the pharmacy (55%) and time constraints (53%). Professional year and practical experience duration were significantly inversely associated with students attitudes (correlation coefficients are −0.30 and −0.37 respectively p <0.05). No statistically significant correlations existed between other characteristics and students attitudes.
Conclusion: Qatar pharmacy students indicated positive attitudes toward PC. However, they perceived several barriers for PC provision. Efforts should be exerted by Qatar's government to help these future pharmacists in overcoming these barriers.
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Calcium Waves in the Xenopus Oocytes Trigger Store Operated Calcium Entry
Authors: Raphael Courjaret and Khaled MachacaAbstractThe oscillation of cytoplasmic calcium concentration exists in a large number of non-excitable cells such as astrocytes in the brain, intestinal cells and oocytes (Fig.1). This rhythmic activity carries information into the cell, regulating various processes such as gene expression or transmitter release. In some cells, such as Xenopus oocytes, the oscillations can rely only on calcium being released in the cytoplasm from intracellular stores after stimulation of inositol triphosphate (IP3) receptors located on the endoplasmic reticulum (ER). To refill the intracellular stores in the ER, the cell has to import extracellular calcium. This is achieved through the STIM/Orai pathway where an ER calcium sensor (STIM) is activated by store depletion and in turn interacts and opens a calcium channel in the plasma membrane (Orai) leading to calcium influx, a process known as Store Operated Calcium Entry (SOCE). In the present work we evaluated the interactions between SOC and intracellular calcium oscillations in Xenopus oocytes. Intracellular calcium levels were monitored using the amplitude of the endogenous calcium-activated chloride currents. Following injection into the cells of a non-hydrolysable analog of IP3 (IP3-DF), long lasting calcium oscillations could be triggered as well as SOCE ( Fig. 1 ). The calcium oscillations were more efficient in promoting SOC than store depletion by ionomycin (2.34 ± 0.55 nA, n=13 vs 0.05 ± 0.02 nA, n=8), the mechanisms involved are currently under study. We also observed that activation of SOC could trigger a calcium wave in a dose-dependent manner following a “Calcium Induced Calcium Release” pattern. This suggests that SOC might not only be involved in replenishing the calcium stores but also in the regulation of the amplitude and timing of calcium oscillations. The well known down-regulation of SOC during oocyte maturation should therefore have important functional consequences on intracellular calcium oscillations.
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RNA-Seq Reveals Novel Mutation Selection and Gene Expression Changes in Ovarian Cancer Metastasis
AbstractThe mutation landscape of cancer is known to evolve as different metastasis develop. As the cancer spreads, certain mutations are selected for and gene expression changes are needed to adapt to the new environment. We have begun to document the changes that occur as cancer metastasizes using Next- Generation Sequencing of mRNA from Ovarian primary tumor and its peritoneal and lymph node metastases. We used data generated using deep-sequencing to evaluate the clonal relationships among primary and metastatic cancers to uncover the natural history of ovarian cancer progression. Using this approach, we have documented numerous Single Nucleotide Polymorphisms (SNP) changes including changes in SNP frequency as the cancer spreads. In combination with gene expression changes these will serve as a powerful tool to begin understanding the continual evolution of cancer in response to new environments.
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Investigation of the Role of Notch Signalling in the Microenvironment-Mediated Tumorigensis of Breast Cancer
Authors: Pejah Ghiabi and Jeremy Arash Rafii TabriziAbstractRecently, a speculative model is proposed that tumor tissue is continuously regenerated by a small population of self-renewing cancer stem cells responsible for initiation, growth and propagation of tumor. Tumor cells reside in a “niche” and have constant interaction with the niche components including tumor vasculature, bone marrow mesenchymal stem cells (BM-MSCs) and the components of the extracellular matrix. It is believed that the growth advantage acquired by tumor cells as well as the ability of cancer stem cells (CSCs) to maintain tumor propagation is partly the outcome of this interaction.
Our study intends to better characterize this crosstalk by looking into the possibility of BM-MSC/endothelial cell-mediated activation of Notch pathway in breast cancer cells through production of certain cytokines aiming at proposing novel therapeutic approaches for targeting this disease.
The CSCs were enriched by culturing breast cancer cells (BCC) in 3D media to obtain multicellular spheres for further analysis. BM-MSC and Akt-activated endothelial cells were co-cultured with BCC and spheres to assess their capability in promoting cancer cell growth. RNA interference approach was applied to Notch3 to determine its role in BCC survival by the niche players. A human cytokine array was used to identify the cytokines that showed different expression patterns in the BCC co-cultures with the niche residents.
BM-MSC or Akt-activated Endothelium was able to increase BCC growth up to 4- and 5-fold, respectively, in contact and under serum-free condition. Blocking Notch3 in BCC or spheres by siRNA or inhibition of notch pathway by GSI reduced the proliferation rate of both entities to 2.5-fold, which might underline the role of notch in the interaction between tumor cells and the niche components. Also, several cytokines were identified that were differentially regulated in co-cultures system among which IL6, IL8, and GROa showed significant up-regulation.
Our preliminary data suggest the role of BM-MSC and endothelial cells in breast cancer growth and survival. Our results propose the idea of notch involvement in this interaction through stimulation by certain cytokines. Further investigation is required to elucidate the exact mechanism that is triggered by these cytokines in tumor propagation and maintenance.
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